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    FAN1 FANCD2 and FANCI associated nuclease 1 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 453282, updated on 10-Oct-2024

    Summary

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    Official Symbol
    FAN1provided by VGNC
    Official Full Name
    FANCD2 and FANCI associated nuclease 1provided by VGNC
    Primary source
    VGNC:VGNC:14639
    Locus tag
    CK820_G0049759
    See related
    Ensembl:ENSPTRG00000006854
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Also known as
    MTMR15
    Orthologs
    human mouse all
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    Genomic context

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    See FAN1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 16 NC_072414.2 (22784393..22897542)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 15 NC_072413.1 (22776996..22894383)

    Chromosome 16 - NC_072414.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134808435 Neighboring gene U8 small nucleolar RNA Neighboring gene putative golgin subfamily A member 8I Neighboring gene transmembrane protein 183A-like Neighboring gene U6 spliceosomal RNA Neighboring gene myotubularin related protein 10 Neighboring gene uncharacterized LOC134808436 Neighboring gene transient receptor potential cation channel subfamily M member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 5'-3' exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables 5'-flap endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables flap-structured DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in interstrand cross-link repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    fanconi-associated nuclease 1
    Names
    FANCD2/FANCI-associated nuclease 1
    myotubularin related protein 15
    XP_009438990.3
    XP_009438992.3
    XP_054522856.1
    XP_063650130.1
    XP_063650131.1
    XP_063650132.1
    XP_510266.4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072414.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      22784393..22897542
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063794060.1 → XP_063650130.1  fanconi-associated nuclease 1 isoform X1

      UniProtKB/TrEMBL
      A0A2J8J8T4, A0A803KIT2, K6ZTI7

    2. XM_063794061.1 → XP_063650131.1  fanconi-associated nuclease 1 isoform X1

      UniProtKB/TrEMBL
      A0A2J8J8T4, A0A803KIT2, K6ZTI7

    3. XM_063794062.1 → XP_063650132.1  fanconi-associated nuclease 1 isoform X1

      UniProtKB/TrEMBL
      A0A2J8J8T4, A0A803KIT2, K6ZTI7

    4. XM_054666881.1 → XP_054522856.1  fanconi-associated nuclease 1 isoform X1

      UniProtKB/TrEMBL
      A0A2J8J8T4, A0A803KIT2, K6ZTI7

    5. XM_510266.7 → XP_510266.4  fanconi-associated nuclease 1 isoform X1

      UniProtKB/TrEMBL
      A0A2J8J8T4, A0A803KIT2, H2Q925, K6ZTI7
      Conserved Domains (2) summary
      smart00734
      Location:41 → 62
      ZnF_Rad18; Rad18-like CCHC zinc finger
      pfam08774
      Location:894 → 1008
      VRR_NUC; VRR-NUC domain

    6. XM_009440717.5 → XP_009438992.3  fanconi-associated nuclease 1 isoform X2

      UniProtKB/TrEMBL
      H2Q925
      Conserved Domains (1) summary
      smart00734
      Location:41 → 62
      ZnF_Rad18; Rad18-like CCHC zinc finger

    7. XM_009440715.4 → XP_009438990.3  fanconi-associated nuclease 1 isoform X1

      UniProtKB/TrEMBL
      A0A2J8J8T4, A0A803KIT2, H2Q925, K6ZTI7
      Conserved Domains (2) summary
      smart00734
      Location:41 → 62
      ZnF_Rad18; Rad18-like CCHC zinc finger
      pfam08774
      Location:894 → 1008
      VRR_NUC; VRR-NUC domain
    Nucleotide Protein
    Heading Accession and Version

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