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    SCAF8 SR-related CTD associated factor 8 [ Gallus gallus (chicken) ]

    Gene ID: 421647, updated on 10-Oct-2024

    Summary

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    Symbol
    SCAF8provided by CGNC
    Full Name
    SR-related CTD associated factor 8provided by CGNC
    Primary source
    CGNC:10218
    See related
    Ensembl:ENSGALG00010005305
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    RBM16
    Orthologs
    human mouse all
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    Genomic context

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    See SCAF8 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (49987100..50135771)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (49892672..50041367)

    Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene interaction protein for cytohesin exchange factors 1 Neighboring gene CNKSR family member 3 Neighboring gene T-cell lymphoma invasion and metastasis 2 Neighboring gene uncharacterized LOC121110260 Neighboring gene transcription factor B1, mitochondrial Neighboring gene claudin 20 Neighboring gene NADPH oxidase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SCAF8; SR-related and CTD-associated factor 8
    Names
    RNA-binding motif protein 16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      49987100..50135771
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015284245.4 → XP_015139731.1  SR-related and CTD-associated factor 8 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XSV1
      Conserved Domains (3) summary
      PHA03247
      Location:654 → 1054
      PHA03247; large tegument protein UL36; Provisional
      cd17004
      Location:5 → 142
      CID_SCAF8; CID (CTD-Interacting Domain) of SR-related and CTD-associated factor 8
      cd12462
      Location:483 → 561
      RRM_SCAF8; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins

    2. XM_015284243.4 → XP_015139729.1  SR-related and CTD-associated factor 8 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XSV1
      Conserved Domains (3) summary
      PHA03247
      Location:654 → 1054
      PHA03247; large tegument protein UL36; Provisional
      cd17004
      Location:5 → 142
      CID_SCAF8; CID (CTD-Interacting Domain) of SR-related and CTD-associated factor 8
      cd12462
      Location:483 → 561
      RRM_SCAF8; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins

    3. XM_015284242.4 → XP_015139728.1  SR-related and CTD-associated factor 8 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XSV1
      Related
      ENSGALP00010007141.1, ENSGALT00010012577.1
      Conserved Domains (3) summary
      PHA03247
      Location:654 → 1054
      PHA03247; large tegument protein UL36; Provisional
      cd17004
      Location:5 → 142
      CID_SCAF8; CID (CTD-Interacting Domain) of SR-related and CTD-associated factor 8
      cd12462
      Location:483 → 561
      RRM_SCAF8; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins

    4. XM_015284246.4 → XP_015139732.1  SR-related and CTD-associated factor 8 isoform X2

      UniProtKB/TrEMBL
      A0A8V0XG74, A0A8V0XMS6
      Related
      ENSGALP00010007142.1, ENSGALT00010012578.1
      Conserved Domains (3) summary
      PHA03247
      Location:647 → 1047
      PHA03247; large tegument protein UL36; Provisional
      cd17004
      Location:5 → 135
      CID_SCAF8; CID (CTD-Interacting Domain) of SR-related and CTD-associated factor 8
      cd12462
      Location:476 → 554
      RRM_SCAF8; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins

    5. XM_046939253.1 → XP_046795209.1  SR-related and CTD-associated factor 8 isoform X3

      UniProtKB/TrEMBL
      A0A8V0XQI6
      Related
      ENSGALP00010007143.1, ENSGALT00010012579.1

    6. XM_015284248.3 → XP_015139734.1  SR-related and CTD-associated factor 8 isoform X4

      UniProtKB/TrEMBL
      A0A8V0XG74
      Conserved Domains (2) summary
      PHA03247
      Location:455 → 855
      PHA03247; large tegument protein UL36; Provisional
      cd12462
      Location:284 → 362
      RRM_SCAF8; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins

    RNA

    1. XR_006938783.1 RNA Sequence

    2. XR_005858541.2 RNA Sequence

    3. XR_003074620.3 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      49892672..50041367
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040667267.2 → XP_040523201.1  SR-related and CTD-associated factor 8 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XSV1
      Conserved Domains (3) summary
      PHA03247
      Location:654 → 1054
      PHA03247; large tegument protein UL36; Provisional
      cd17004
      Location:5 → 142
      CID_SCAF8; CID (CTD-Interacting Domain) of SR-related and CTD-associated factor 8
      cd12462
      Location:483 → 561
      RRM_SCAF8; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins

    2. XM_040667266.2 → XP_040523200.1  SR-related and CTD-associated factor 8 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XSV1
      Conserved Domains (3) summary
      PHA03247
      Location:654 → 1054
      PHA03247; large tegument protein UL36; Provisional
      cd17004
      Location:5 → 142
      CID_SCAF8; CID (CTD-Interacting Domain) of SR-related and CTD-associated factor 8
      cd12462
      Location:483 → 561
      RRM_SCAF8; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins

    3. XM_040667265.2 → XP_040523199.1  SR-related and CTD-associated factor 8 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XSV1
      Conserved Domains (3) summary
      PHA03247
      Location:654 → 1054
      PHA03247; large tegument protein UL36; Provisional
      cd17004
      Location:5 → 142
      CID_SCAF8; CID (CTD-Interacting Domain) of SR-related and CTD-associated factor 8
      cd12462
      Location:483 → 561
      RRM_SCAF8; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins

    4. XM_040667268.2 → XP_040523202.1  SR-related and CTD-associated factor 8 isoform X2

      UniProtKB/TrEMBL
      A0A8V0XG74, A0A8V0XMS6
      Conserved Domains (3) summary
      PHA03247
      Location:647 → 1047
      PHA03247; large tegument protein UL36; Provisional
      cd17004
      Location:5 → 135
      CID_SCAF8; CID (CTD-Interacting Domain) of SR-related and CTD-associated factor 8
      cd12462
      Location:476 → 554
      RRM_SCAF8; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins

    5. XM_046914682.1 → XP_046770638.1  SR-related and CTD-associated factor 8 isoform X3

      UniProtKB/TrEMBL
      A0A8V0XQI6

    6. XM_040667269.1 → XP_040523203.1  SR-related and CTD-associated factor 8 isoform X4

      UniProtKB/TrEMBL
      A0A8V0XG74
      Conserved Domains (2) summary
      PHA03247
      Location:455 → 855
      PHA03247; large tegument protein UL36; Provisional
      cd12462
      Location:284 → 362
      RRM_SCAF8; RNA recognition motif (RRM) found in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins

    RNA

    1. XR_006934101.1 RNA Sequence

    2. XR_005848169.2 RNA Sequence

    3. XR_005848170.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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