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    IGSF11 immunoglobulin superfamily member 11 [ Gallus gallus (chicken) ]

    Gene ID: 418346, updated on 10-Oct-2024

    Summary

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    Symbol
    IGSF11provided by CGNC
    Full Name
    immunoglobulin superfamily member 11provided by CGNC
    Primary source
    CGNC:11223
    See related
    Ensembl:ENSGALG00010025653
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See IGSF11 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (80862061..80984837)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (81048333..81171304)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 31 Neighboring gene microRNA 3539 Neighboring gene uroplakin 1B Neighboring gene C3orf30 homolog Neighboring gene uncharacterized LOC107054644 Neighboring gene uncharacterized LOC121106587

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ionotropic glutamate receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell-cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    immunoglobulin superfamily member 11
    Names
    brain and testis-specific immunoglobin superfamily protein
    immunoglobulin superfamily protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001318422.2 → NP_001305351.1  immunoglobulin superfamily member 11 precursor

      Status: VALIDATED

      Source sequence(s)
      AY332741, BU274162, BU353546, CO421737, CR390962, HAEK01107366, JAENSK010000017
      UniProtKB/TrEMBL
      A0A140T8H1, A0A8V1A3W4
      Related
      ENSGALP00010038726.1, ENSGALT00010062636.1
      Conserved Domains (3) summary
      smart00410
      Location:165 → 241
      IG_like; Immunoglobulin like
      pfam00047
      Location:164 → 231
      ig; Immunoglobulin domain
      pfam07686
      Location:37 → 133
      V-set; Immunoglobulin V-set domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      80862061..80984837
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040697888.2 → XP_040553822.1  immunoglobulin superfamily member 11 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZYQ7, A0A8V1A3W4
      Related
      ENSGALP00010038715.1, ENSGALT00010062620.1
      Conserved Domains (3) summary
      pfam13927
      Location:136 → 201
      Ig_3; Immunoglobulin domain
      cd00096
      Location:20 → 30
      Ig; Ig strand B [structural motif]
      cl11960
      Location:13 → 118
      Ig; Immunoglobulin domain

    2. XM_015294662.4 → XP_015150148.1  immunoglobulin superfamily member 11 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZYQ7, A0A8V1A3W4
      Conserved Domains (3) summary
      pfam13927
      Location:136 → 201
      Ig_3; Immunoglobulin domain
      cd00096
      Location:20 → 30
      Ig; Ig strand B [structural motif]
      cl11960
      Location:13 → 118
      Ig; Immunoglobulin domain

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      81048333..81171304
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046907764.1 → XP_046763720.1  immunoglobulin superfamily member 11 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZYQ7

    2. XM_046907765.1 → XP_046763721.1  immunoglobulin superfamily member 11 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZYQ7
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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