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    PRPF8 pre-mRNA processing factor 8 [ Gallus gallus (chicken) ]

    Gene ID: 417559, updated on 17-Aug-2024

    Summary

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    Symbol
    PRPF8provided by CGNC
    Full Name
    pre-mRNA processing factor 8provided by CGNC
    Primary source
    CGNC:2126
    See related
    Ensembl:ENSGALG00010029347
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 19
    Exon count:
    43
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 19 NC_052550.1 (5829850..5847858, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 19 NC_052591.1 (5566425..5584426, complement)

    Chromosome 19 - NC_052550.1Genomic Context describing neighboring genes Neighboring gene scavenger receptor class F member 1 Neighboring gene Rab interacting lysosomal protein Neighboring gene microRNA mir-12234 Neighboring gene apoptosis-inducing factor 3-like Neighboring gene TLC domain containing 2 Neighboring gene microRNA 22

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables U1 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables U2 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables U5 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables U6 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metallopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pre-mRNA intronic binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spliceosomal tri-snRNP complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U5 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pre-mRNA-processing-splicing factor 8
    Names
    PRP8 pre-mRNA processing factor 8 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052550.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      5829850..5847858 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_415805.8 → XP_415805.2  pre-mRNA-processing-splicing factor 8

      See identical proteins and their annotated locations for XP_415805.2

      UniProtKB/TrEMBL
      A0A8V1ANA7, E1BZT5
      Related
      ENSGALP00010043663.1, ENSGALT00010070972.1
      Conserved Domains (1) summary
      COG5178
      Location:10 → 2335
      PRP8; U5 snRNP spliceosome subunit [RNA processing and modification]

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052591.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      5566425..5584426 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046930235.1 → XP_046786191.1  pre-mRNA-processing-splicing factor 8

      UniProtKB/TrEMBL
      A0A8V1ANA7, E1BZT5
    Nucleotide Protein
    Heading Accession and Version

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