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    GAPDH glyceraldehyde-3-phosphate dehydrogenase [ Canis lupus familiaris (dog) ]

    Gene ID: 403755, updated on 5-Apr-2024

    Summary

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    Gene symbol
    GAPDH
    Gene description
    glyceraldehyde-3-phosphate dehydrogenase
    See related
    Ensembl:ENSCAFG00845028918
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See GAPDH in Genome Data Viewer
    Location:
    chromosome: 27
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 27 NC_051831.1 (38823453..38827216, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 27 NC_006609.4 (8144013..8147775)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 27 NC_049248.1 (7622712..7626472)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 27 NC_049287.1 (38695468..38699229, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 27 NC_049768.1 (38737013..38740771, complement)

    Chromosome 27 - NC_051831.1Genomic Context describing neighboring genes Neighboring gene NOP2 nucleolar protein Neighboring gene uncharacterized LOC111092765 Neighboring gene intermediate filament family orphan 1 Neighboring gene non-SMC condensin I complex subunit D2 Neighboring gene small nucleolar RNA U85 Neighboring gene mitochondrial ribosomal protein L51

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Canine glyceraldehyde-3-phosphate dehydrogenase complementary DNA: polymerase chain reaction amplification, cloning, partial sequence analysis, and use as loading control in ribonuclease protection assays. Gröne A, et al. Am J Vet Res, 1996 Mar. PMID 8669750
    2. Synoviocyte neotissues towards in vitro meniscal tissue engineering. Warnock JJ, et al. Res Vet Sci, 2013 Dec. PMID 23978557
    3. Semi-quantitative analysis of multiple cytokines in canine peripheral blood mononuclear cells by [correction of zby] a single tube RT-PCR. Chamizo C, et al. Vet Immunol Immunopathol, 2001 Dec. PMID 11730929
    4. Housekeeping genes for phylogenetic analysis of eutherian relationships. Kullberg M, et al. Mol Biol Evol, 2006 Aug. PMID 16751257

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glucose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glyceraldehyde-3-phosphate dehydrogenase
    Names
    peptidyl-cysteine S-nitrosylase GAPDH
    NP_001003142.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001003142.2 → NP_001003142.2  glyceraldehyde-3-phosphate dehydrogenase

      Status: VALIDATED

      Source sequence(s)
      DN438402, DN873470
      UniProtKB/Swiss-Prot
      Q28259, Q9N2D6
      UniProtKB/TrEMBL
      A0A8I3Q5N9, A0A8P0SJL8
      Related
      ENSCAFP00845040065.1, ENSCAFT00845051100.1
      Conserved Domains (1) summary
      PLN02272
      Location:2 → 330
      PLN02272; glyceraldehyde-3-phosphate dehydrogenase

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051831.1 Reference ROS_Cfam_1.0

      Range
      38823453..38827216 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049287.1 Alternate UMICH_Zoey_3.1

      Range
      38695468..38699229 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049768.1 Alternate UNSW_CanFamBas_1.0

      Range
      38737013..38740771 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049248.1 Alternate UU_Cfam_GSD_1.0

      Range
      7622712..7626472
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006609.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      8144013..8147775
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q28259.3 GenPept UniProtKB/Swiss-Prot:Q28259

    Gene LinkOut

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