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    PTGDS prostaglandin D2 synthase [ Canis lupus familiaris (dog) ]

    Gene ID: 403740, updated on 17-Aug-2024

    Summary

    Official Symbol
    PTGDSprovided by VGNC
    Official Full Name
    prostaglandin D2 synthaseprovided by VGNC
    Primary source
    VGNC:VGNC:55792
    See related
    Ensembl:ENSCAFG00845005146
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    NEW
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    Genomic context

    See PTGDS in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (49525429..49528641, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (47860991..47864203, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (48647517..48650729, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (48301642..48304854, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (48600355..48603569, complement)

    Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene PAXX non-homologous end joining factor Neighboring gene lipocalin like 1 Neighboring gene lipocalin 12 Neighboring gene complement C8 gamma chain

    Genomic regions, transcripts, and products

    Pathways from PubChem

    General protein information

    Preferred Names
    prostaglandin-H2 D-isomerase
    Names
    PGD2 synthase
    PGDS
    PGDS2
    glutathione-independent PGD synthase
    glutathione-independent PGD synthetase
    lipocalin-type prostaglandin-D synthase
    prostaglandin D synthase
    prostaglandin D2 synthase 21kDa (brain)
    NP_001003131.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001003131.1NP_001003131.1  prostaglandin-H2 D-isomerase precursor

      See identical proteins and their annotated locations for NP_001003131.1

      Status: PROVISIONAL

      Source sequence(s)
      AB026988
      UniProtKB/Swiss-Prot
      Q9XS65
      UniProtKB/TrEMBL
      A0A8C0JNM0, A0A8C0M732
      Related
      ENSCAFP00845007248.1, ENSCAFT00845009214.1
      Conserved Domains (1) summary
      cd19419
      Location:30187
      lipocalin_L-PGDS; lipocalin-type prostaglandin D synthase

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051813.1 Reference ROS_Cfam_1.0

      Range
      49525429..49528641 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049269.1 Alternate UMICH_Zoey_3.1

      Range
      48301642..48304854 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

      Range
      48600355..48603569 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

      Range
      48647517..48650729 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      47860991..47864203 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)