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    CD8BP CD8b molecule pseudogene [ Gallus gallus (chicken) ]

    Gene ID: 396175, updated on 17-Aug-2024

    Summary

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    Symbol
    CD8BPprovided by CGNC
    Full Name
    CD8b molecule pseudogeneprovided by CGNC
    Primary source
    CGNC:49687
    See related
    Ensembl:ENSGALG00010017365
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    CD8B; CD8B1
    Orthologs
    human mouse all
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    Genomic context

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    See CD8BP in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (85548365..85554156, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (85352120..85357897, complement)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene T-cell surface glycoprotein CD8 alpha chain-like Neighboring gene T-cell surface glycoprotein CD8 alpha chain-like Neighboring gene uncharacterized LOC121113238 Neighboring gene uncharacterized LOC422926 Neighboring gene uncharacterized LOC107053326

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Polymorphism of chicken CD8-alpha, but not CD8-beta. Luhtala M, et al. Immunogenetics, 1997. PMID 9271629
    2. Identification and analysis of the expression of CD8 alpha beta and CD8 alpha alpha isoforms in chickens reveals a major TCR-gamma delta CD8 alpha beta subset of intestinal intraepithelial lymphocytes. Tregaskes CA, et al. J Immunol, 1995 May 1. PMID 7722305
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables MHC class I protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables coreceptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    T-cell surface glycoprotein CD8 beta chain
    Names
    CD8 antigen, beta polypeptide 1 (p37)
    CD8 beta chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_205247.3 → NP_990578.3  T-cell surface glycoprotein CD8 beta chain precursor

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000077
      UniProtKB/TrEMBL
      A0A8V0Z0D5, Q90769
      Related
      ENSGALP00010024512.1, ENSGALT00010041903.1
      Conserved Domains (1) summary
      smart00406
      Location:56 → 121
      IGv; Immunoglobulin V-Type

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      85548365..85554156 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      85352120..85357897 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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