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    Ankrd52 ankyrin repeat domain 52 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362811, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Ankrd52provided by RGD
    Official Full Name
    ankyrin repeat domain 52provided by RGD
    Primary source
    RGD:1307124
    See related
    EnsemblRapid:ENSRNOG00000030597 AllianceGenome:RGD:1307124
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1307124
    Summary
    Orthologous to human ANKRD52 (ankyrin repeat domain 52). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Adrenal (RPKM 64.2), Muscle (RPKM 60.2) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ankrd52 in Genome Data Viewer
    Location:
    7q11
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (1390730..1410139)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (806829..820481)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (2795888..2809538)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene citrate synthase Neighboring gene coenzyme Q10A Neighboring gene solute carrier family 39 member 5 Neighboring gene small nucleolar RNA SNORA79 Neighboring gene nucleic acid binding protein 2 Neighboring gene ring finger protein 41

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191875.1 → NP_001178804.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000007
      Conserved Domains (4) summary
      cd00204
      Location:134 → 259
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:177 → 269
      Ank_2; Ankyrin repeats (3 copies)
      pfam13637
      Location:339 → 392
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:108 → 137
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      1390730..1410139
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063263699.1 → XP_063119769.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C isoform X1

      Related
      ENSRNOP00000045243.6, ENSRNOT00000047462.7
    Nucleotide Protein Strain
    Heading Accession and Version

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