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    Dgcr2 DiGeorge syndrome critical region gene 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 360742, updated on 17-Aug-2024

    Summary

    Symbol
    Dgcr2provided by RGD
    Full Name
    DiGeorge syndrome critical region gene 2provided by RGD
    Primary source
    RGD:1310567
    See related
    EnsemblRapid:ENSRNOG00000061814 AllianceGenome:RGD:1310567
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in cognition. Predicted to act upstream of or within response to xenobiotic stimulus. Predicted to be located in membrane. Orthologous to human DGCR2 (DiGeorge syndrome critical region gene 2). [provided by Alliance of Genome Resources, Apr 2022]
    Annotation information
    Note: GeneIDs: 360742 and 103693608 are annotated independently on Rnor_6.0 but may be redundant loci. [12 Feb 2015]
    Expression
    Biased expression in Thymus (RPKM 197.9), Kidney (RPKM 192.4) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Dgcr2 in Genome Data Viewer
    Location:
    11q23
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (96598247..96648791)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (83093961..83144507)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (87242441..87290806)

    Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene ess-2 splicing factor homolog Neighboring gene testis-specific serine kinase 2 Neighboring gene testis-specific serine kinase 1B Neighboring gene protein FAM246A-like Neighboring gene carbonic anhydrase 15

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    integral membrane protein DGCR2/IDD
    Names
    integral membrane protein DGCR2/IDD-like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001012146.1NP_001012146.1  integral membrane protein DGCR2/IDD precursor

      See identical proteins and their annotated locations for NP_001012146.1

      Status: PROVISIONAL

      Source sequence(s)
      BC081905
      UniProtKB/TrEMBL
      A0A0G2JUR3, A0A8I5ZQN6, A6JSJ9, E9PTM9, Q66HD9
      Conserved Domains (3) summary
      cd03599
      Location:111263
      CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)
      smart00214
      Location:267325
      VWC; von Willebrand factor (vWF) type C domain
      cd00112
      Location:3066
      LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086029.1 Reference GRCr8

      Range
      96598247..96648791
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039088526.2XP_038944454.1  integral membrane protein DGCR2/IDD isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZQN6
      Related
      ENSRNOP00000069196.2, ENSRNOT00000083415.3
      Conserved Domains (3) summary
      cd03599
      Location:114266
      CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)
      smart00214
      Location:270328
      VWC; von Willebrand factor (vWF) type C domain
      cd00112
      Location:3066
      LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    2. XM_039088528.2XP_038944456.1  integral membrane protein DGCR2/IDD isoform X2

      Conserved Domains (3) summary
      cd03599
      Location:114266
      CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)
      smart00214
      Location:270328
      VWC; von Willebrand factor (vWF) type C domain
      cd00112
      Location:3066
      LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    3. XM_063270658.1XP_063126728.1  integral membrane protein DGCR2/IDD isoform X3