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    Fbxo34 F-box protein 34 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 305830, updated on 2-Nov-2024

    Summary

    Official Symbol
    Fbxo34provided by RGD
    Official Full Name
    F-box protein 34provided by RGD
    Primary source
    RGD:1310108
    See related
    EnsemblRapid:ENSRNOG00000011704 AllianceGenome:RGD:1310108
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human FBXO34 (F-box protein 34). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Brain (RPKM 107.0), Testes (RPKM 93.7) and 9 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Fbxo34 in Genome Data Viewer
    Location:
    15p14
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (23199103..23266929)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (20719395..20787905)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (24254356..24334890)

    Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene DLG associated protein 5 Neighboring gene uncharacterized LOC120096955 Neighboring gene autophagy related 14 Neighboring gene uncharacterized LOC108352900

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107257.1NP_001100727.1  F-box only protein 34

      See identical proteins and their annotated locations for NP_001100727.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474040
      UniProtKB/TrEMBL
      A6KE53, G3V7J6
      Conserved Domains (1) summary
      pfam12937
      Location:596630
      F-box-like; F-box-like

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086033.1 Reference GRCr8

      Range
      23199103..23266929
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063274213.1XP_063130283.1  F-box only protein 34 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JV06, B5DF06
    2. XM_039093267.2XP_038949195.1  F-box only protein 34 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JV06, B5DF06
      Related
      ENSRNOP00000110709.1, ENSRNOT00000157584.1
      Conserved Domains (1) summary
      pfam12937
      Location:545579
      F-box-like
    3. XM_017599661.3XP_017455150.1  F-box only protein 34 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JV06, B5DF06
      Related
      ENSRNOP00000077360.1, ENSRNOT00000103624.2
      Conserved Domains (1) summary
      pfam12937
      Location:545579
      F-box-like
    4. XM_063274212.1XP_063130282.1  F-box only protein 34 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JV06, B5DF06
    5. XM_063274209.1XP_063130279.1  F-box only protein 34 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JV06, B5DF06
      Related
      ENSRNOP00000093424.1, ENSRNOT00000110327.2
    6. XM_063274211.1XP_063130281.1  F-box only protein 34 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JV06, B5DF06
      Related
      ENSRNOP00000069303.1, ENSRNOT00000092161.3
    7. XM_063274210.1XP_063130280.1  F-box only protein 34 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JV06, B5DF06
      Related
      ENSRNOP00000093017.1, ENSRNOT00000105127.2
    8. XM_063274215.1XP_063130285.1  F-box only protein 34 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JV06, B5DF06
      Related
      ENSRNOP00000089431.1, ENSRNOT00000118253.2
    9. XM_063274216.1XP_063130286.1  F-box only protein 34 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JV06, B5DF06
      Related
      ENSRNOP00000109127.1, ENSRNOT00000157034.1
    10. XM_063274214.1XP_063130284.1  F-box only protein 34 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JV06, B5DF06
      Related
      ENSRNOP00000081795.1, ENSRNOT00000114524.2