Ankrd34c ankyrin repeat domain 34C [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Ankrd34cprovided by RGD
Official Full Name: ankyrin repeat domain 34Cprovided by RGD
Primary source: RGD:1305403
See related: EnsemblRapid:ENSRNOG00000013937 AllianceGenome:RGD:1305403
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1305403
Summary: Predicted to be active in pi-body. Orthologous to human ANKRD34C (ankyrin repeat domain 34C). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Restricted expression toward (RPKM 30.8) See more
Orthologs: human mouse all
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Genomic context

Location:: 8q31

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	8	NC_086026.1 (99151112..99161607, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	8	NC_051343.1 (90271264..90281759, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	8	NC_005107.4 (97102128..97115650, complement)

Chromosome 8 - NC_086026.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
is_active_in pi-body	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: ankyrin repeat domain-containing protein 34C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001106845.1 → NP_001100315.1 ankyrin repeat domain-containing protein 34C

See identical proteins and their annotated locations for NP_001100315.1

Status: PROVISIONAL

Source sequence(s)

CH473954

UniProtKB/TrEMBL

A6I206, D3ZI64

Related

ENSRNOP00000018685.2, ENSRNOT00000018685.5

Conserved Domains (4) summary

PLN03192
Location:43 → 298

PLN03192; Voltage-dependent potassium channel; Provisional

sd00045
Location:43 → 82

ANK; ANK repeat [structural motif]

pfam12796
Location:32 → 116

Ank_2; Ankyrin repeats (3 copies)

cl39094
Location:90 → 148

Ank_2; Ankyrin repeats (3 copies)