Ndufs6-ps1 NADH:ubiquinone oxidoreductase subunit S6, pseudogene 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Ndufs6-ps1provided by RGD
Official Full Name: NADH:ubiquinone oxidoreductase subunit S6, pseudogene 1provided by RGD
Primary source: RGD:3156
See related: EnsemblRapid:ENSRNOG00000018068 AllianceGenome:RGD:3156
Gene type: pseudo
RefSeq status: INFERRED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Ndub13; Ndufs6; Ip13dis; RATIp13dis
Summary: Predicted to be involved in mitochondrial electron transport, NADH to ubiquinone. Predicted to act upstream of or within several processes, including mitochondrion organization; multicellular organism aging; and respiratory electron transport chain. Predicted to be located in mitochondrion. Predicted to be part of mitochondrial respiratory chain complex I. Biomarker of arteriosclerosis. Human ortholog(s) of this gene implicated in cervical cancer and nuclear type mitochondrial complex I deficiency 9. Orthologous to human NDUFS6 (NADH:ubiquinone oxidoreductase subunit S6). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Heart (RPKM 1030.6), Muscle (RPKM 639.6) and 8 other tissues See more
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Genomic context

Location:: 2q12

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	2	NC_086020.1 (28936402..28936955)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	2	NC_051337.1 (27201706..27202241)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	2	NC_005101.4 (26471173..26471587)

Chromosome 2 - NC_086020.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Other Names

CI-13kD-A
NADH dehydrogenase (ubiquinone) Fe-S protein 6
NADH dehydrogenase Fe-S protein 6
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial
NADH ubiquinone oxidoreductase
NADH-ubiquinone oxidoreductase 13 kDa-A subunit
NADH:ubiquinone oxidoreductase subunit S6
complex I-13kD-A

Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info
involved_in mitochondrial electron transport, NADH to ubiquinone	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in mitochondrial inner membrane	IEA Inferred from Electronic Annotation more info
part_of respiratory chain complex I	IBA Inferred from Biological aspect of Ancestor more info
part_of respiratory chain complex I	ISS Inferred from Sequence or Structural Similarity more info

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.