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    LINC01091 long intergenic non-protein coding RNA 1091 [ Homo sapiens (human) ]

    Gene ID: 285419, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC01091provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1091provided by HGNC
    Primary source
    HGNC:HGNC:27721
    See related
    Ensembl:ENSG00000249464 AllianceGenome:HGNC:27721
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01091 in Genome Data Viewer
    Location:
    4q28.1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (123649991..123930778)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (126953999..127234781)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (124571146..124851933)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377405 Neighboring gene MPRA-validated peak5100 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:124468793-124469376 Neighboring gene long intergenic non-protein coding RNA 2435 Neighboring gene NANOG hESC enhancer GRCh37_chr4:124485860-124486361 Neighboring gene NANOG hESC enhancer GRCh37_chr4:124506198-124506715 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21881 Neighboring gene Sharpr-MPRA regulatory region 12612 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:124521451-124522096 Neighboring gene uncharacterized LOC124900775 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:124670185-124670770 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:124670771-124671354 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:124671355-124671938 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21882 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_72756 Neighboring gene ribosomal protein L21 pseudogene 50 Neighboring gene Sharpr-MPRA regulatory region 6240 Neighboring gene VISTA enhancer hs1525 Neighboring gene uncharacterized LOC124900776 Neighboring gene uncharacterized LOC105377407 Neighboring gene peptidylprolyl isomerase A pseudogene 76

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027105.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC096732, AC108075, AI051428, AW771701, BM311133, BX108574
      Related
      ENST00000508111.6

    2. NR_027106.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093767, BC033378
      Related
      ENST00000515769.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      123649991..123930778
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      126953999..127234781
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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