NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_015823.2 RefSeqGene
- Range
-
5002..100942
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_000824.5 → NP_000815.1 glycine receptor subunit beta isoform A precursor
See identical proteins and their annotated locations for NP_000815.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1, also known as variant A) represents the longest transcript and encodes the longer isoform (A). Both variants 1 and 2 encode the same isoform.
- Source sequence(s)
-
AC079403
- Consensus CDS
-
CCDS3796.1
- UniProtKB/Swiss-Prot
- A8K3K2, D3DP23, F5GWE1, P48167
- Related
- ENSP00000264428.4, ENST00000264428.9
- Conserved Domains (2) summary
-
- TIGR00860
Location:43 → 496
- LIC; Cation transporter family protein
- cd19010
Location:79 → 265
- LGIC_ECD_GlyR_beta; extracellular domain of glycine receptor beta subunit
-
NM_001166060.2 → NP_001159532.1 glycine receptor subunit beta isoform A precursor
See identical proteins and their annotated locations for NP_001159532.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2, also known as variant B) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same isoform (A).
- Source sequence(s)
-
AC079403
- Consensus CDS
-
CCDS3796.1
- UniProtKB/Swiss-Prot
- A8K3K2, D3DP23, F5GWE1, P48167
- Related
- ENSP00000427186.1, ENST00000509282.1
- Conserved Domains (2) summary
-
- TIGR00860
Location:43 → 496
- LIC; Cation transporter family protein
- cd19010
Location:79 → 265
- LGIC_ECD_GlyR_beta; extracellular domain of glycine receptor beta subunit
-
NM_001166061.2 → NP_001159533.1 glycine receptor subunit beta isoform B precursor
See identical proteins and their annotated locations for NP_001159533.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3, also known as GlyR beta delta8) lacks an alternate internal exon that causes a frameshift in the 3' coding region, compared to variant 1. The encoded isoform (B) has a distinct C-terminus and is shorter than isoform A.
- Source sequence(s)
-
AC079403
- Consensus CDS
-
CCDS54813.1
- UniProtKB/Swiss-Prot
-
P48167
- Related
- ENSP00000441873.1, ENST00000541722.5
- Conserved Domains (4) summary
-
- cd03558
Location:183 → 197
- LGIC_ECD; Cys-loop [structural motif]
- cd03559
Location:268 → 291
- LGIC_TM; TM1 helix [structural motif]
- cl28912
Location:79 → 265
- LGIC_ECD; extracellular domain (ECD) of Cys-loop neurotransmitter-gated ion channels (also known as ligand-gated ion channel (LGIC))
- cl38911
Location:268 → 302
- LGIC_TM; transmembrane domain of Cys-loop neurotransmitter-gated ion channels
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000004.12 Reference GRCh38.p14 Primary Assembly
- Range
-
157076150..157172090
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047450075.1 → XP_047306031.1 glycine receptor subunit beta isoform X2
-
XM_017008035.3 → XP_016863524.1 glycine receptor subunit beta isoform X3
- UniProtKB/Swiss-Prot
-
P48167
- Conserved Domains (4) summary
-
- cd03558
Location:183 → 197
- LGIC_ECD; Cys-loop [structural motif]
- cd03559
Location:268 → 291
- LGIC_TM; TM1 helix [structural motif]
- cl28912
Location:79 → 265
- LGIC_ECD; extracellular domain (ECD) of Cys-loop neurotransmitter-gated ion channels (also known as ligand-gated ion channel (LGIC))
- cl38911
Location:268 → 302
- LGIC_TM; transmembrane domain of Cys-loop neurotransmitter-gated ion channels
-
XM_017008034.2 → XP_016863523.1 glycine receptor subunit beta isoform X1
- Conserved Domains (1) summary
-
- cl27321
Location:1 → 398
- Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
Alternate T2T-CHM13v2.0
Genomic
-
NC_060928.1 Alternate T2T-CHM13v2.0
- Range
-
160421647..160517588
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054349701.1 → XP_054205676.1 glycine receptor subunit beta isoform X2
-
XM_054349702.1 → XP_054205677.1 glycine receptor subunit beta isoform X3
-
XM_054349700.1 → XP_054205675.1 glycine receptor subunit beta isoform X1