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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001162387.1 → NP_001155859.1 peroxisomal membrane protein 11B isoform 1
See identical proteins and their annotated locations for NP_001155859.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 3' UTR compared to variant 1. Both variants 1 and 2 encode the same isoform (1).
- Source sequence(s)
-
AK082279, AK082778, BB010355, BY789006, CD806660
- Consensus CDS
-
CCDS17643.1
- UniProtKB/Swiss-Prot
- Q8C4G1, Q9D090, Q9Z210
- Related
- ENSMUSP00000037962.9, ENSMUST00000048766.15
- Conserved Domains (1) summary
-
- pfam05648
Location:1 → 250
- PEX11; Peroxisomal biogenesis factor 11 (PEX11)
-
NM_001162388.1 → NP_001155860.1 peroxisomal membrane protein 11B isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' and 3' UTRs, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) has a shorter and distinct N-terminus compared to isoform 1.
- Source sequence(s)
-
AC122037
- Consensus CDS
-
CCDS51006.1
- UniProtKB/TrEMBL
-
E9PXK7
- Related
- ENSMUSP00000126631.2, ENSMUST00000165842.3
- Conserved Domains (1) summary
-
- pfam05648
Location:4 → 236
- PEX11; Peroxisomal biogenesis factor 11 (PEX11)
-
NM_011069.3 → NP_035199.3 peroxisomal membrane protein 11B isoform 1
See identical proteins and their annotated locations for NP_035199.3
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1). Both variants 1 and 2 encode the same isoform (1).
- Source sequence(s)
-
AK011709, AK082778, BB010355, BY789006
- Consensus CDS
-
CCDS17643.1
- UniProtKB/Swiss-Prot
- Q8C4G1, Q9D090, Q9Z210
- Related
- ENSMUSP00000113365.2, ENSMUST00000118557.8
- Conserved Domains (1) summary
-
- pfam05648
Location:1 → 250
- PEX11; Peroxisomal biogenesis factor 11 (PEX11)
RNA
-
NR_027844.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) uses an alternate splice site in the 5' exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AK005236, AK082778, BB010355, BY789006
-
NR_027845.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) contains an alternate 5' exon compared to variant 1. This variant is represented as non-coding because it lacks a portion of the 5' coding region, including the translational start codon, found in variant 1.
- Source sequence(s)
-
AA462527, AK082778, BB010355, BQ443231, BY285331, CB525686
- Related
-
ENSMUST00000144962.8
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000069.7 Reference GRCm39 C57BL/6J
- Range
-
96542673..96552697
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)