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    M6pr mannose-6-phosphate receptor, cation dependent [ Mus musculus (house mouse) ]

    Gene ID: 17113, updated on 28-Oct-2024

    Summary

    Official Symbol
    M6prprovided by MGI
    Official Full Name
    mannose-6-phosphate receptor, cation dependentprovided by MGI
    Primary source
    MGI:MGI:96904
    See related
    Ensembl:ENSMUSG00000007458 AllianceGenome:MGI:96904
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Mpr46; CD-MPR
    Summary
    Predicted to enable retromer complex binding activity. Involved in lysosomal transport. Acts upstream of or within secretion of lysosomal enzymes. Located in late endosome. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; liver and biliary system; and skin. Orthologous to human M6PR (mannose-6-phosphate receptor, cation dependent). [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Ubiquitous expression in placenta adult (RPKM 50.8), bladder adult (RPKM 46.6) and 28 other tissues See more
    Orthologs
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    Genomic context

    See M6pr in Genome Data Viewer
    Location:
    6 F1; 6 57.52 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (122285679..122294639)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (122308720..122317680)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53340 Neighboring gene predicted gene 6637 Neighboring gene STARR-positive B cell enhancer ABC_E345 Neighboring gene polyhomeotic 1 Neighboring gene STARR-seq mESC enhancer starr_17220 Neighboring gene STARR-seq mESC enhancer starr_17223 Neighboring gene STARR-positive B cell enhancer mm9_chr6:122337361-122337661 Neighboring gene RIKEN cDNA 1700063H04 gene Neighboring gene VISTA enhancer mm94

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (4) 
    • Gene trapped (1) 
    • Targeted (2)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein domain specific binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables retromer complex binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables retromer complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within intracellular protein transport TAS
    Traceable Author Statement
    more info
    PubMed 
    involved_in lysosomal transport IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in protein targeting to lysosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in protein targeting to lysosome IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within secretion of lysosomal enzymes IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endosome ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    located_in late endosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in perinuclear region of cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in trans-Golgi network IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    cation-dependent mannose-6-phosphate receptor
    Names
    46 kDa mannose 6-phosphate receptor
    CD Man-6-P receptor
    MPR 46

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_010749.7NP_034879.2  cation-dependent mannose-6-phosphate receptor precursor

      See identical proteins and their annotated locations for NP_034879.2

      Status: VALIDATED

      Source sequence(s)
      AK153302, BC046956, CF730051
      Consensus CDS
      CCDS20493.1
      UniProtKB/Swiss-Prot
      P24668
      UniProtKB/TrEMBL
      Q3UF03, Q3UKQ5
      Related
      ENSMUSP00000007602.9, ENSMUST00000007602.15
      Conserved Domains (1) summary
      pfam02157
      Location:1278
      Man-6-P_recep; Mannose-6-phosphate receptor

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      122285679..122294639
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)