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    Dok1 docking protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 13448, updated on 14-Nov-2024

    Summary

    Official Symbol
    Dok1provided by MGI
    Official Full Name
    docking protein 1provided by MGI
    Primary source
    MGI:MGI:893587
    See related
    Ensembl:ENSMUSG00000068335 AllianceGenome:MGI:893587
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    p62DOK
    Summary
    Acts upstream of or within Ras protein signal transduction; cell surface receptor protein tyrosine kinase signaling pathway; and macrophage colony-stimulating factor signaling pathway. Predicted to be located in cytosol and nucleus. Predicted to be active in cytoplasm. Is expressed in central nervous system and retina. Orthologous to human DOK1 (docking protein 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in liver E14.5 (RPKM 9.9), spleen adult (RPKM 9.8) and 25 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Dok1 in Genome Data Viewer
    Location:
    6 C3; 6 35.94 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (83007915..83010448, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (83030932..83033495, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene meiosis 1 associated protein Neighboring gene predicted gene, 53290 Neighboring gene predicted gene, 32644 Neighboring gene STARR-seq mESC enhancer starr_16455 Neighboring gene STARR-positive B cell enhancer ABC_E2791 Neighboring gene lysyl oxidase-like 3 Neighboring gene STARR-positive B cell enhancer ABC_E9275 Neighboring gene microRNA 7040 Neighboring gene HtrA serine peptidase 2 Neighboring gene ancient ubiquitous protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (2)  1 citation

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    docking protein 1
    Names
    downstream of tyrosine kinase 1
    p62(dok)

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409625.1NP_001396554.1  docking protein 1 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC104324, AC158652
    2. NM_001409626.1NP_001396555.1  docking protein 1 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC104324, AC158652
    3. NM_010070.5NP_034200.4  docking protein 1 isoform 1

      See identical proteins and their annotated locations for NP_034200.4

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AC104324, AC158652
      Consensus CDS
      CCDS20265.1
      UniProtKB/Swiss-Prot
      P97465, Q9R213
      UniProtKB/TrEMBL
      Q3UWF9
      Related
      ENSMUSP00000087079.6, ENSMUST00000089651.6
      Conserved Domains (3) summary
      cd01203
      Location:151253
      PTB_DOK1_DOK2_DOK3; Downstream of tyrosine kinase 1, 2, and 3 proteins phosphotyrosine-binding domain (PTBi)
      pfam00169
      Location:5116
      PH; PH domain
      cl17171
      Location:6119
      PH-like; Pleckstrin homology-like domain

    RNA

    1. NR_176878.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC104324, AC158652
      Related
      ENSMUST00000149918.2
    2. NR_176879.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC104324, AC158652
    3. NR_176880.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC104324, AC158652

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      83007915..83010448 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)