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    LINC01243 long intergenic non-protein coding RNA 1243 [ Homo sapiens (human) ]

    Gene ID: 101929620, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC01243provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1243provided by HGNC
    Primary source
    HGNC:HGNC:49814
    See related
    Ensembl:ENSG00000260720 AllianceGenome:HGNC:49814
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01243 in Genome Data Viewer
    Location:
    9p21.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (31371611..31381490, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (31387066..31396946, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (31371609..31381488, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376009 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_107948 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_107952 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:31210546-31211745 Neighboring gene solute carrier family 25 member 6 pseudogene 2 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:31272612-31273811 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr9:31274811-31275744 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:31294395-31294903 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28257 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28258 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_108019 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28259 Neighboring gene MT-ATP6 pseudogene 30 Neighboring gene MT-CO3 pseudogene 30

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135134.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL353783, BC040892
      Related
      ENST00000562065.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      31371611..31381490 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      31387066..31396946 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials