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    LOC101927881 uncharacterized LOC101927881 [ Homo sapiens (human) ]

    Gene ID: 101927881, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC101927881
    Gene description
    uncharacterized LOC101927881
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC101927881 in Genome Data Viewer
    Location:
    2q14.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (128864600..128868727)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (129300681..129304808)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (129622174..129626301)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373611 Neighboring gene uncharacterized LOC124907887 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16514 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:129394036-129394585 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:129394586-129395134 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:129395685-129396233 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:129396234-129396783 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:129398907-129399566 Neighboring gene NANOG hESC enhancer GRCh37_chr2:129401849-129402350 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:129402677-129403594 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129421710-129422444 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129439760-129440284 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129448087-129448879 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:129450556-129450729 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16515 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16516 Neighboring gene uncharacterized LOC124907888 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16517 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129523559-129524071 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129528311-129528849 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129527772-129528310 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:129533429-129534628 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129547330-129547830 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129569784-129570284 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:129592419-129593118 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:129621764-129622354 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:129816763-129816957 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:129944797-129945329 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:129950197-129951124 Neighboring gene uncharacterized LOC105373612 Neighboring gene long intergenic non-protein coding RNA 1854 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:130056887-130057388 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16518 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16519 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16520 Neighboring gene small nucleolar RNA U13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110278.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016748

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      128864600..128868727
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      129300681..129304808
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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