U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    POGZ pogo transposable element derived with ZNF domain [ Canis lupus familiaris (dog) ]

    Gene ID: 100856450, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    POGZprovided by VGNC
    Official Full Name
    pogo transposable element derived with ZNF domainprovided by VGNC
    Primary source
    VGNC:VGNC:44770
    See related
    Ensembl:ENSCAFG00845023413
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See POGZ in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 17 NC_051821.1 (61482101..61528240, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 17 NC_006599.4 (59909098..59954694, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 17 NC_049238.1 (61124503..61170655, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 17 NC_049277.1 (60309922..60355542, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 17 NC_049758.1 (60395876..60441670, complement)

    Chromosome 17 - NC_051821.1Genomic Context describing neighboring genes Neighboring gene selenium binding protein 1 Neighboring gene proteasome 20S subunit beta 4 Neighboring gene uncharacterized LOC106559927 Neighboring gene cingulin Neighboring gene U6 spliceosomal RNA Neighboring gene tuftelin 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    pogo transposable element with ZNF domain

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051821.1 Reference ROS_Cfam_1.0

      Range
      61482101..61528240 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038423190.1 → XP_038279118.1  pogo transposable element with ZNF domain isoform X2

      UniProtKB/TrEMBL
      A0A8C0KJY5
      Conserved Domains (5) summary
      smart00674
      Location:1012 → 1073
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:404 → 453
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:523 → 544
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:487 → 520
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1153 → 1264
      rve; Integrase core domain

    2. XM_038423188.1 → XP_038279116.1  pogo transposable element with ZNF domain isoform X1

      UniProtKB/TrEMBL
      A0A8C0KJY5
      Related
      ENSCAFP00845032439.1, ENSCAFT00845041373.1
      Conserved Domains (5) summary
      smart00674
      Location:1021 → 1082
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:271 → 462
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:532 → 553
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:496 → 529
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1162 → 1273
      rve; Integrase core domain

    3. XM_038423189.1 → XP_038279117.1  pogo transposable element with ZNF domain isoform X1

      UniProtKB/TrEMBL
      A0A8C0KJY5
      Conserved Domains (5) summary
      smart00674
      Location:1021 → 1082
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:271 → 462
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:532 → 553
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:496 → 529
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1162 → 1273
      rve; Integrase core domain

    4. XM_038423192.1 → XP_038279120.1  pogo transposable element with ZNF domain isoform X4

      UniProtKB/TrEMBL
      A0A8C0KI54
      Conserved Domains (6) summary
      smart00674
      Location:959 → 1020
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:351 → 400
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:470 → 491
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:434 → 467
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam05109
      Location:140 → 391
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      cl21549
      Location:1100 → 1211
      rve; Integrase core domain

    5. XM_038423191.1 → XP_038279119.1  pogo transposable element with ZNF domain isoform X3

      UniProtKB/TrEMBL
      A0A8C0KI54
      Related
      ENSCAFP00845032565.1, ENSCAFT00845041538.1
      Conserved Domains (5) summary
      smart00674
      Location:968 → 1029
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:218 → 409
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:479 → 500
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:443 → 476
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1109 → 1220
      rve; Integrase core domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049277.1 Alternate UMICH_Zoey_3.1

      Range
      60309922..60355542 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038499679.1 → XP_038355607.1  pogo transposable element with ZNF domain isoform X2

    2. XM_038499678.1 → XP_038355606.1  pogo transposable element with ZNF domain isoform X1

      Conserved Domains (5) summary
      smart00674
      Location:1021 → 1082
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:271 → 462
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:532 → 553
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:496 → 529
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1162 → 1273
      rve; Integrase core domain

    3. XM_038499677.1 → XP_038355605.1  pogo transposable element with ZNF domain isoform X1

      Conserved Domains (5) summary
      smart00674
      Location:1021 → 1082
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:271 → 462
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:532 → 553
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:496 → 529
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1162 → 1273
      rve; Integrase core domain

    4. XM_038499681.1 → XP_038355609.1  pogo transposable element with ZNF domain isoform X4

    5. XM_038499680.1 → XP_038355608.1  pogo transposable element with ZNF domain isoform X3

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049758.1 Alternate UNSW_CanFamBas_1.0

      Range
      60395876..60441670 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038626343.1 → XP_038482271.1  pogo transposable element with ZNF domain isoform X2

    2. XM_038626345.1 → XP_038482273.1  pogo transposable element with ZNF domain isoform X4

    3. XM_038626344.1 → XP_038482272.1  pogo transposable element with ZNF domain isoform X3

    4. XM_038626341.1 → XP_038482269.1  pogo transposable element with ZNF domain isoform X1

      Conserved Domains (5) summary
      smart00674
      Location:1021 → 1082
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:271 → 462
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:532 → 553
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:496 → 529
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1162 → 1273
      rve; Integrase core domain

    5. XM_038626342.1 → XP_038482270.1  pogo transposable element with ZNF domain isoform X1

      Conserved Domains (5) summary
      smart00674
      Location:1021 → 1082
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:271 → 462
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:532 → 553
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:496 → 529
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1162 → 1273
      rve; Integrase core domain

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049238.1 Alternate UU_Cfam_GSD_1.0

      Range
      61124503..61170655 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038562247.1 → XP_038418175.1  pogo transposable element with ZNF domain isoform X2

      UniProtKB/TrEMBL
      A0A8C0KJY5
      Conserved Domains (5) summary
      smart00674
      Location:1012 → 1073
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:404 → 453
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:523 → 544
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:487 → 520
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1153 → 1264
      rve; Integrase core domain

    2. XM_038562246.1 → XP_038418174.1  pogo transposable element with ZNF domain isoform X1

      UniProtKB/TrEMBL
      A0A8C0KJY5
      Conserved Domains (5) summary
      smart00674
      Location:1021 → 1082
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:271 → 462
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:532 → 553
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:496 → 529
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1162 → 1273
      rve; Integrase core domain

    3. XM_038562245.1 → XP_038418173.1  pogo transposable element with ZNF domain isoform X1

      UniProtKB/TrEMBL
      A0A8C0KJY5
      Conserved Domains (5) summary
      smart00674
      Location:1021 → 1082
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:271 → 462
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:532 → 553
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:496 → 529
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1162 → 1273
      rve; Integrase core domain

    4. XM_038562249.1 → XP_038418177.1  pogo transposable element with ZNF domain isoform X4

      UniProtKB/TrEMBL
      A0A8C0KI54
      Conserved Domains (6) summary
      smart00674
      Location:959 → 1020
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:351 → 400
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:470 → 491
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:434 → 467
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam05109
      Location:140 → 391
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      cl21549
      Location:1100 → 1211
      rve; Integrase core domain

    5. XM_038562248.1 → XP_038418176.1  pogo transposable element with ZNF domain isoform X3

      UniProtKB/TrEMBL
      A0A8C0KI54
      Conserved Domains (5) summary
      smart00674
      Location:968 → 1029
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:218 → 409
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:479 → 500
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:443 → 476
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1109 → 1220
      rve; Integrase core domain

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006599.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      59909098..59954694 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003639637.5 → XP_003639685.3  pogo transposable element with ZNF domain isoform X2

      UniProtKB/TrEMBL
      A0A8C0KJY5
      Conserved Domains (6) summary
      smart00674
      Location:1012 → 1073
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      sd00017
      Location:523 → 544
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:487 → 520
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam09606
      Location:101 → 348
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cl21549
      Location:1147 → 1271
      rve; Integrase core domain
      cl27427
      Location:404 → 453
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]

    2. XM_038453492.1 → XP_038309420.1  pogo transposable element with ZNF domain isoform X1

      UniProtKB/TrEMBL
      A0A8C0KJY5, A0A8P0SWF3
      Conserved Domains (5) summary
      smart00674
      Location:1021 → 1082
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:271 → 462
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:532 → 553
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:496 → 529
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1162 → 1273
      rve; Integrase core domain

    3. XM_005630808.4 → XP_005630865.2  pogo transposable element with ZNF domain isoform X1

      UniProtKB/TrEMBL
      A0A8C0KJY5, A0A8P0SWF3
      Conserved Domains (5) summary
      smart00674
      Location:1021 → 1082
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:271 → 462
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:532 → 553
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:496 → 529
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1162 → 1273
      rve; Integrase core domain

    4. XM_003639638.5 → XP_003639686.3  pogo transposable element with ZNF domain isoform X4

      UniProtKB/TrEMBL
      A0A8C0KI54
      Conserved Domains (6) summary
      smart00674
      Location:959 → 1020
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      sd00017
      Location:470 → 491
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:434 → 467
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam09606
      Location:48 → 295
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cl21549
      Location:1094 → 1218
      rve; Integrase core domain
      cl27427
      Location:351 → 400
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]

    5. XM_005630809.4 → XP_005630866.2  pogo transposable element with ZNF domain isoform X3

      UniProtKB/TrEMBL
      A0A8C0KI54
      Conserved Domains (6) summary
      smart00674
      Location:968 → 1029
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      sd00017
      Location:479 → 500
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:443 → 476
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam09606
      Location:48 → 304
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cl21549
      Location:1103 → 1227
      rve; Integrase core domain
      cl27427
      Location:218 → 409
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials