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    POGZ pogo transposable element derived with ZNF domain [ Canis lupus familiaris (dog) ]

    Gene ID: 100856450, updated on 17-Aug-2024

    Summary

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    Official Symbol
    POGZprovided by VGNC
    Official Full Name
    pogo transposable element derived with ZNF domainprovided by VGNC
    Primary source
    VGNC:VGNC:44770
    See related
    Ensembl:ENSCAFG00845023413
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See POGZ in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 17 NC_051821.1 (61482101..61528240, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 17 NC_006599.4 (59909098..59954694, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 17 NC_049238.1 (61124503..61170655, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 17 NC_049277.1 (60309922..60355542, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 17 NC_049758.1 (60395876..60441670, complement)

    Chromosome 17 - NC_051821.1Genomic Context describing neighboring genes Neighboring gene selenium binding protein 1 Neighboring gene proteasome 20S subunit beta 4 Neighboring gene uncharacterized LOC106559927 Neighboring gene cingulin Neighboring gene U6 spliceosomal RNA Neighboring gene tuftelin 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pogo transposable element with ZNF domain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051821.1 Reference ROS_Cfam_1.0

      Range
      61482101..61528240 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038423190.1 → XP_038279118.1  pogo transposable element with ZNF domain isoform X2

      UniProtKB/TrEMBL
      A0A8C0KJY5
      Conserved Domains (5) summary
      smart00674
      Location:1012 → 1073
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:404 → 453
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:523 → 544
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:487 → 520
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1153 → 1264
      rve; Integrase core domain

    2. XM_038423188.1 → XP_038279116.1  pogo transposable element with ZNF domain isoform X1

      UniProtKB/TrEMBL
      A0A8C0KJY5
      Related
      ENSCAFP00845032439.1, ENSCAFT00845041373.1
      Conserved Domains (5) summary
      smart00674
      Location:1021 → 1082
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:271 → 462
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:532 → 553
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:496 → 529
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1162 → 1273
      rve; Integrase core domain

    3. XM_038423189.1 → XP_038279117.1  pogo transposable element with ZNF domain isoform X1

      UniProtKB/TrEMBL
      A0A8C0KJY5
      Conserved Domains (5) summary
      smart00674
      Location:1021 → 1082
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:271 → 462
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:532 → 553
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:496 → 529
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1162 → 1273
      rve; Integrase core domain

    4. XM_038423192.1 → XP_038279120.1  pogo transposable element with ZNF domain isoform X4

      UniProtKB/TrEMBL
      A0A8C0KI54
      Conserved Domains (6) summary
      smart00674
      Location:959 → 1020
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:351 → 400
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:470 → 491
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:434 → 467
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam05109
      Location:140 → 391
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      cl21549
      Location:1100 → 1211
      rve; Integrase core domain

    5. XM_038423191.1 → XP_038279119.1  pogo transposable element with ZNF domain isoform X3

      UniProtKB/TrEMBL
      A0A8C0KI54
      Related
      ENSCAFP00845032565.1, ENSCAFT00845041538.1
      Conserved Domains (5) summary
      smart00674
      Location:968 → 1029
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:218 → 409
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:479 → 500
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:443 → 476
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1109 → 1220
      rve; Integrase core domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049277.1 Alternate UMICH_Zoey_3.1

      Range
      60309922..60355542 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038499679.1 → XP_038355607.1  pogo transposable element with ZNF domain isoform X2

    2. XM_038499678.1 → XP_038355606.1  pogo transposable element with ZNF domain isoform X1

      Conserved Domains (5) summary
      smart00674
      Location:1021 → 1082
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:271 → 462
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:532 → 553
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:496 → 529
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1162 → 1273
      rve; Integrase core domain

    3. XM_038499677.1 → XP_038355605.1  pogo transposable element with ZNF domain isoform X1

      Conserved Domains (5) summary
      smart00674
      Location:1021 → 1082
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:271 → 462
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:532 → 553
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:496 → 529
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1162 → 1273
      rve; Integrase core domain

    4. XM_038499681.1 → XP_038355609.1  pogo transposable element with ZNF domain isoform X4

    5. XM_038499680.1 → XP_038355608.1  pogo transposable element with ZNF domain isoform X3

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049758.1 Alternate UNSW_CanFamBas_1.0

      Range
      60395876..60441670 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038626343.1 → XP_038482271.1  pogo transposable element with ZNF domain isoform X2

    2. XM_038626345.1 → XP_038482273.1  pogo transposable element with ZNF domain isoform X4

    3. XM_038626344.1 → XP_038482272.1  pogo transposable element with ZNF domain isoform X3

    4. XM_038626341.1 → XP_038482269.1  pogo transposable element with ZNF domain isoform X1

      Conserved Domains (5) summary
      smart00674
      Location:1021 → 1082
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:271 → 462
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:532 → 553
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:496 → 529
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1162 → 1273
      rve; Integrase core domain

    5. XM_038626342.1 → XP_038482270.1  pogo transposable element with ZNF domain isoform X1

      Conserved Domains (5) summary
      smart00674
      Location:1021 → 1082
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:271 → 462
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:532 → 553
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:496 → 529
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1162 → 1273
      rve; Integrase core domain

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049238.1 Alternate UU_Cfam_GSD_1.0

      Range
      61124503..61170655 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038562247.1 → XP_038418175.1  pogo transposable element with ZNF domain isoform X2

      UniProtKB/TrEMBL
      A0A8C0KJY5
      Conserved Domains (5) summary
      smart00674
      Location:1012 → 1073
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:404 → 453
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:523 → 544
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:487 → 520
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1153 → 1264
      rve; Integrase core domain

    2. XM_038562246.1 → XP_038418174.1  pogo transposable element with ZNF domain isoform X1

      UniProtKB/TrEMBL
      A0A8C0KJY5
      Conserved Domains (5) summary
      smart00674
      Location:1021 → 1082
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:271 → 462
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:532 → 553
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:496 → 529
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1162 → 1273
      rve; Integrase core domain

    3. XM_038562245.1 → XP_038418173.1  pogo transposable element with ZNF domain isoform X1

      UniProtKB/TrEMBL
      A0A8C0KJY5
      Conserved Domains (5) summary
      smart00674
      Location:1021 → 1082
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:271 → 462
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:532 → 553
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:496 → 529
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1162 → 1273
      rve; Integrase core domain

    4. XM_038562249.1 → XP_038418177.1  pogo transposable element with ZNF domain isoform X4

      UniProtKB/TrEMBL
      A0A8C0KI54
      Conserved Domains (6) summary
      smart00674
      Location:959 → 1020
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:351 → 400
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:470 → 491
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:434 → 467
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam05109
      Location:140 → 391
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      cl21549
      Location:1100 → 1211
      rve; Integrase core domain

    5. XM_038562248.1 → XP_038418176.1  pogo transposable element with ZNF domain isoform X3

      UniProtKB/TrEMBL
      A0A8C0KI54
      Conserved Domains (5) summary
      smart00674
      Location:968 → 1029
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:218 → 409
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:479 → 500
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:443 → 476
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1109 → 1220
      rve; Integrase core domain

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006599.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      59909098..59954694 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003639637.5 → XP_003639685.3  pogo transposable element with ZNF domain isoform X2

      UniProtKB/TrEMBL
      A0A8C0KJY5
      Conserved Domains (6) summary
      smart00674
      Location:1012 → 1073
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      sd00017
      Location:523 → 544
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:487 → 520
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam09606
      Location:101 → 348
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cl21549
      Location:1147 → 1271
      rve; Integrase core domain
      cl27427
      Location:404 → 453
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]

    2. XM_038453492.1 → XP_038309420.1  pogo transposable element with ZNF domain isoform X1

      UniProtKB/TrEMBL
      A0A8C0KJY5, A0A8P0SWF3
      Conserved Domains (5) summary
      smart00674
      Location:1021 → 1082
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:271 → 462
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:532 → 553
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:496 → 529
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1162 → 1273
      rve; Integrase core domain

    3. XM_005630808.4 → XP_005630865.2  pogo transposable element with ZNF domain isoform X1

      UniProtKB/TrEMBL
      A0A8C0KJY5, A0A8P0SWF3
      Conserved Domains (5) summary
      smart00674
      Location:1021 → 1082
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      PLN02983
      Location:271 → 462
      PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase
      sd00017
      Location:532 → 553
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:496 → 529
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl21549
      Location:1162 → 1273
      rve; Integrase core domain

    4. XM_003639638.5 → XP_003639686.3  pogo transposable element with ZNF domain isoform X4

      UniProtKB/TrEMBL
      A0A8C0KI54
      Conserved Domains (6) summary
      smart00674
      Location:959 → 1020
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      sd00017
      Location:470 → 491
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:434 → 467
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam09606
      Location:48 → 295
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cl21549
      Location:1094 → 1218
      rve; Integrase core domain
      cl27427
      Location:351 → 400
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]

    5. XM_005630809.4 → XP_005630866.2  pogo transposable element with ZNF domain isoform X3

      UniProtKB/TrEMBL
      A0A8C0KI54
      Conserved Domains (6) summary
      smart00674
      Location:968 → 1029
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
      sd00017
      Location:479 → 500
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:443 → 476
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam09606
      Location:48 → 304
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cl21549
      Location:1103 → 1227
      rve; Integrase core domain
      cl27427
      Location:218 → 409
      AccB; Biotin carboxyl carrier protein [Coenzyme transport and metabolism, Lipid transport and metabolism]
    Nucleotide Protein
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