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    VPS16 VPS16 core subunit of CORVET and HOPS complexes [ Canis lupus familiaris (dog) ]

    Gene ID: 100856310, updated on 17-Aug-2024

    Summary

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    Official Symbol
    VPS16provided by VGNC
    Official Full Name
    VPS16 core subunit of CORVET and HOPS complexesprovided by VGNC
    Primary source
    VGNC:VGNC:48278
    See related
    Ensembl:ENSCAFG00845015734
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Also known as
    VPS16A
    Orthologs
    human mouse all
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    Genomic context

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    See VPS16 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 24 NC_051828.1 (18822276..18845277, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 24 NC_006606.4 (18230648..18253873, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 24 NC_049245.1 (18854786..18877793, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 24 NC_049284.1 (18415491..18438476, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 24 NC_049765.1 (18526233..18549247, complement)

    Chromosome 24 - NC_051828.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein S26 Neighboring gene protein tyrosine phosphatase receptor type A Neighboring gene uncharacterized LOC102155387 Neighboring gene PC-esterase domain containing 1A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endosomal transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vacuole fusion, non-autophagic IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of HOPS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 16 homolog
    Names
    VPS16, CORVET/HOPS core subunit
    vacuolar protein sorting 16 homolog A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051828.1 Reference ROS_Cfam_1.0

      Range
      18822276..18845277 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038433300.1 → XP_038289228.1  vacuolar protein sorting-associated protein 16 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0JR36, A0A8C0M5A1, A0A8P0SBY1
      Related
      ENSCAFP00845022071.1, ENSCAFT00845028052.1
      Conserved Domains (2) summary
      pfam04841
      Location:4 → 420
      Vps16_N; Vps16, N-terminal region
      pfam04840
      Location:517 → 835
      Vps16_C; Vps16, C-terminal region

    2. XM_038433301.1 → XP_038289229.1  vacuolar protein sorting-associated protein 16 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8P0SBY1
      Conserved Domains (2) summary
      pfam04841
      Location:1 → 254
      Vps16_N; Vps16, N-terminal region
      pfam04840
      Location:351 → 669
      Vps16_C; Vps16, C-terminal region

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049284.1 Alternate UMICH_Zoey_3.1

      Range
      18415491..18438476 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038508503.1 → XP_038364431.1  vacuolar protein sorting-associated protein 16 homolog isoform X1

      Conserved Domains (2) summary
      pfam04841
      Location:4 → 420
      Vps16_N; Vps16, N-terminal region
      pfam04840
      Location:517 → 835
      Vps16_C; Vps16, C-terminal region

    2. XM_038508504.1 → XP_038364432.1  vacuolar protein sorting-associated protein 16 homolog isoform X2

      Conserved Domains (2) summary
      pfam04841
      Location:1 → 254
      Vps16_N; Vps16, N-terminal region
      pfam04840
      Location:351 → 669
      Vps16_C; Vps16, C-terminal region

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049765.1 Alternate UNSW_CanFamBas_1.0

      Range
      18526233..18549247 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038636019.1 → XP_038491947.1  vacuolar protein sorting-associated protein 16 homolog isoform X1

      Conserved Domains (2) summary
      pfam04841
      Location:4 → 420
      Vps16_N; Vps16, N-terminal region
      pfam04840
      Location:517 → 835
      Vps16_C; Vps16, C-terminal region

    2. XM_038636020.1 → XP_038491948.1  vacuolar protein sorting-associated protein 16 homolog isoform X2

      Conserved Domains (2) summary
      pfam04841
      Location:1 → 254
      Vps16_N; Vps16, N-terminal region
      pfam04840
      Location:351 → 669
      Vps16_C; Vps16, C-terminal region

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049245.1 Alternate UU_Cfam_GSD_1.0

      Range
      18854786..18877793 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038571774.1 → XP_038427702.1  vacuolar protein sorting-associated protein 16 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0JR36, A0A8C0M5A1, A0A8P0SBY1
      Conserved Domains (2) summary
      pfam04841
      Location:4 → 420
      Vps16_N; Vps16, N-terminal region
      pfam04840
      Location:517 → 835
      Vps16_C; Vps16, C-terminal region

    2. XM_038571775.1 → XP_038427703.1  vacuolar protein sorting-associated protein 16 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8P0SBY1
      Conserved Domains (2) summary
      pfam04841
      Location:1 → 254
      Vps16_N; Vps16, N-terminal region
      pfam04840
      Location:351 → 669
      Vps16_C; Vps16, C-terminal region

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006606.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      18230648..18253873 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003639850.5 → XP_003639898.1  vacuolar protein sorting-associated protein 16 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8P0SBY1
      Conserved Domains (2) summary
      pfam04841
      Location:4 → 420
      Vps16_N; Vps16, N-terminal region
      pfam04840
      Location:517 → 835
      Vps16_C; Vps16, C-terminal region

    2. XM_022408918.2 → XP_022264626.1  vacuolar protein sorting-associated protein 16 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8P0SBY1
      Conserved Domains (2) summary
      pfam04841
      Location:1 → 254
      Vps16_N; Vps16, N-terminal region
      pfam04840
      Location:351 → 669
      Vps16_C; Vps16, C-terminal region
    Nucleotide Protein
    Heading Accession and Version

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