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    STX1A syntaxin 1A [ Canis lupus familiaris (dog) ]

    Gene ID: 100855965, updated on 17-Aug-2024

    Summary

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    Official Symbol
    STX1Aprovided by VGNC
    Official Full Name
    syntaxin 1Aprovided by VGNC
    Primary source
    VGNC:VGNC:46954
    See related
    Ensembl:ENSCAFG00845003270
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See STX1A in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (6381214..6398029)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (8263577..8280400)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (6482166..6498979)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (6370709..6387529)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (6318461..6335266)

    Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119872138 Neighboring gene uncharacterized LOC119872139 Neighboring gene abhydrolase domain containing 11 Neighboring gene BICD family like 3 Neighboring gene small Cajal body-specific RNA 20 Neighboring gene BUD23 rRNA methyltransferase and ribosome maturation factor Neighboring gene DnaJ heat shock protein family (Hsp40) member C30

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables SNARE binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic vesicle fusion to presynaptic active zone membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle docking IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in presynaptic active zone membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    syntaxin-1A
    Names
    syntaxin 1A (brain)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051810.1 Reference ROS_Cfam_1.0

      Range
      6381214..6398029
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038667894.1 → XP_038523822.1  syntaxin-1A isoform X1

      UniProtKB/TrEMBL
      A0A8C0KH98
      Related
      ENSCAFP00845004586.1, ENSCAFT00845005779.1
      Conserved Domains (2) summary
      pfam00804
      Location:30 → 227
      Syntaxin
      pfam05739
      Location:228 → 279
      SNARE; SNARE domain

    2. XM_038667895.1 → XP_038523823.1  syntaxin-1A isoform X2

      Conserved Domains (2) summary
      pfam00804
      Location:68 → 224
      Syntaxin
      pfam05739
      Location:225 → 276
      SNARE; SNARE domain

    RNA

    1. XR_005428208.1 RNA Sequence

      Related
      ENSCAFT00845005785.1

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049266.1 Alternate UMICH_Zoey_3.1

      Range
      6370709..6387529
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038477849.1 → XP_038333777.1  syntaxin-1A isoform X1

      Conserved Domains (2) summary
      pfam00804
      Location:30 → 227
      Syntaxin
      pfam05739
      Location:228 → 279
      SNARE; SNARE domain

    2. XM_038477850.1 → XP_038333778.1  syntaxin-1A isoform X2

      Conserved Domains (2) summary
      pfam00804
      Location:68 → 224
      Syntaxin
      pfam05739
      Location:225 → 276
      SNARE; SNARE domain

    RNA

    1. XR_005326665.1 RNA Sequence

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

      Range
      6318461..6335266
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038603189.1 → XP_038459117.1  syntaxin-1A isoform X1

      Conserved Domains (2) summary
      pfam00804
      Location:30 → 227
      Syntaxin
      pfam05739
      Location:228 → 279
      SNARE; SNARE domain

    2. XM_038603190.1 → XP_038459118.1  syntaxin-1A isoform X2

      Conserved Domains (2) summary
      pfam00804
      Location:68 → 224
      Syntaxin
      pfam05739
      Location:225 → 276
      SNARE; SNARE domain

    RNA

    1. XR_005395074.1 RNA Sequence

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

      Range
      6482166..6498979
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038539100.1 → XP_038395028.1  syntaxin-1A isoform X1

      UniProtKB/TrEMBL
      A0A8C0KH98
      Conserved Domains (2) summary
      pfam00804
      Location:30 → 227
      Syntaxin
      pfam05739
      Location:228 → 279
      SNARE; SNARE domain

    2. XM_038539101.1 → XP_038395029.1  syntaxin-1A isoform X2

      Conserved Domains (2) summary
      pfam00804
      Location:68 → 224
      Syntaxin
      pfam05739
      Location:225 → 276
      SNARE; SNARE domain

    RNA

    1. XR_005360546.1 RNA Sequence

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      8263577..8280400
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038536963.1 → XP_038392891.1  syntaxin-1A isoform X1

      UniProtKB/TrEMBL
      A0A8C0KH98
      Conserved Domains (2) summary
      pfam00804
      Location:30 → 227
      Syntaxin
      pfam05739
      Location:228 → 279
      SNARE; SNARE domain

    2. XM_038536974.1 → XP_038392902.1  syntaxin-1A isoform X2

      Conserved Domains (2) summary
      pfam00804
      Location:68 → 224
      Syntaxin
      pfam05739
      Location:225 → 276
      SNARE; SNARE domain

    RNA

    1. XR_005359569.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials