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    POU3F1 POU class 3 homeobox 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 100855694, updated on 17-Aug-2024

    Summary

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    Official Symbol
    POU3F1provided by VGNC
    Official Full Name
    POU class 3 homeobox 1provided by VGNC
    Primary source
    VGNC:VGNC:44829
    See related
    Ensembl:ENSCAFG00845030221 Ensembl:ENSCAFG00845030228
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See POU3F1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 15 NC_051819.1 (4675978..4679074)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 15 NC_006597.4 (4790366..4793455)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 15 NC_049236.1 (4619497..4622595)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 15 NC_049275.1 (4536678..4539775)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 15 NC_049756.1 (4603051..4604421)

    Chromosome 15 - NC_051819.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119869323 Neighboring gene nascent polypeptide-associated complex subunit alpha, muscle-specific form-like Neighboring gene UTP11 small subunit processome component Neighboring gene four and a half LIM domains 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    POU domain, class 3, transcription factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051819.1 Reference ROS_Cfam_1.0

      Range
      4675978..4679074
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038687217.1 → XP_038543145.1  POU domain, class 3, transcription factor 1

      UniProtKB/TrEMBL
      A0A8I3Q9V3
      Related
      ENSCAFP00845042118.1, ENSCAFT00845053600.1
      Conserved Domains (2) summary
      smart00352
      Location:252 → 326
      POU; Found in Pit-Oct-Unc transcription factors
      pfam00046
      Location:347 → 401
      Homeobox; Homeobox domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049275.1 Alternate UMICH_Zoey_3.1

      Range
      4536678..4539775
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038496790.1 → XP_038352718.1  POU domain, class 3, transcription factor 1

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049756.1 Alternate UNSW_CanFamBas_1.0

      Range
      4603051..4604421
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038621463.1 → XP_038477391.1  POU domain, class 3, transcription factor 1

      Conserved Domains (2) summary
      smart00352
      Location:252 → 326
      POU; Found in Pit-Oct-Unc transcription factors
      pfam00046
      Location:347 → 401
      Homeobox; Homeobox domain

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049236.1 Alternate UU_Cfam_GSD_1.0

      Range
      4619497..4622595
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038557554.1 → XP_038413482.1  POU domain, class 3, transcription factor 1

      UniProtKB/TrEMBL
      A0A8C0JX70

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006597.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      4790366..4793455
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038451862.1 → XP_038307790.1  POU domain, class 3, transcription factor 1

      UniProtKB/TrEMBL
      A0A8P0SQ23
      Conserved Domains (2) summary
      smart00352
      Location:251 → 325
      POU; Found in Pit-Oct-Unc transcription factors
      pfam00046
      Location:346 → 400
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases
    Research Materials