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    LINC02982 long intergenic non-protein coding RNA 2982 [ Homo sapiens (human) ]

    Gene ID: 100506688, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC02982provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2982provided by HGNC
    Primary source
    HGNC:HGNC:56056
    See related
    Ensembl:ENSG00000215246
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in heart (RPKM 3.8), placenta (RPKM 0.5) and 5 other tissues See more
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    Genomic context

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    See LINC02982 in Genome Data Viewer
    Location:
    5p15.33
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (987177..997340, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (892797..902973, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (987292..997455, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:892285-892917 Neighboring gene Sharpr-MPRA regulatory region 1606 Neighboring gene thyroid hormone receptor interactor 13 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:916909-917478 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:918895-919438 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:919439-919982 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15879 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:929600-929776 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22303 Neighboring gene uncharacterized LOC124900931 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22304 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:965451-965952 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:991246-991960 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:994888-995388 Neighboring gene uncharacterized LOC124900932 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1004327-1004970 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1004971-1005615 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1005616-1006259 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1007413-1008178 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1008179-1008944 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1017054-1017554 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1018687-1019370 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1022097-1022758 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:1024745-1025404 Neighboring gene NKD inhibitor of WNT signaling pathway 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1025625-1026127 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1026128-1026629 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1026630-1027132 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1028355-1028856 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1038746-1039520

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Expression of the Long Non-Coding RNA HOTAIR Correlates with Disease Progression in Bladder Cancer and Is Contained in Bladder Cancer Patient Urinary Exosomes. Berrondo C, et al. PLoS One, 2016. PMID 26800519, Free PMC Article
    2. Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer. Wolpin BM, et al. Nat Genet, 2014 Sep. PMID 25086665, Free PMC Article
    3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    4. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104614.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC116351, AK126199, DB164120
      Related
      ENST00000399869.1

    2. NR_104615.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC116351, AK126199, DB146870

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      987177..997340 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187548.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      5684..15847 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      892797..902973 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001242737.1: Suppressed sequence

      Description
      NM_001242737.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version

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