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    xnf7 Nuclear factor 7 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100327256, updated on 4-Nov-2024

    Summary

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    Official Symbol
    xnf7provided by Xenbase
    Official Full Name
    Nuclear factor 7provided by Xenbase
    Primary source
    Xenbase:XB-GENE-6462269
    See related
    Ensembl:ENSXETG00000001933 AllianceGenome:Xenbase:XB-GENE-6462269
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    xnf7-a; xnf7-b; xnf7-o
    Summary
    Predicted to enable transferase activity and zinc ion binding activity. Predicted to act upstream of or within regulation of DNA-templated transcription. Orthologous to human TRIM69 (tripartite motif containing 69). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See xnf7 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (5964750..5975079, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (1822316..1832297, complement)

    Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene serine protease 53 Neighboring gene branched chain ketoacid dehydrogenase kinase Neighboring gene zinc-binding protein A33 Neighboring gene K(lysine) acetyltransferase 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC185544, MGC185884, MGC186357

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Nuclear factor 7
    Names
    nuclear factor 7, brain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001171536.1 → NP_001165007.1  Nuclear factor 7

      See identical proteins and their annotated locations for NP_001165007.1

      Status: PROVISIONAL

      Source sequence(s)
      BC166279
      UniProtKB/TrEMBL
      A0A803KJ23, B2GUH4, F6SDB1
      Related
      ENSXETP00000004125.4, ENSXETT00000004125.4
      Conserved Domains (6) summary
      smart00336
      Location:259 → 300
      BBOX; B-Box-type zinc finger
      pfam11717
      Location:59 → 115
      Tudor-knot; RNA binding activity-knot of a chromodomain
      pfam15227
      Location:184 → 223
      zf-C3HC4_4; zinc finger of C3HC4-type, RING
      cd13733
      Location:476 → 644
      SPRY_PRY_C-I_1; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM5, TRIM6, TRIM7, TRIM10, TRIM11, TRIM17, TRIM20, TRIM21, TRIM27, TRIM35, TRIM38, TRIM41, TRIM50, TRIM58, TRIM60, TRIM62, TRIM69, TRIM72, NF7 and bloodthirsty
      cl17182
      Location:93 → 193
      NAT_SF; N-Acyltransferase superfamily: Various enyzmes that characteristicly catalyze the transfer of an acyl group to a substrate
      cl23765
      Location:313 → 433
      iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      5964750..5975079 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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