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    firrm FIGNL1 interacting regulator of recombination and mitosis [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100145634, updated on 4-Nov-2024

    Summary

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    Official Symbol
    firrmprovided by Xenbase
    Official Full Name
    FIGNL1 interacting regulator of recombination and mitosisprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-5952633
    See related
    Ensembl:ENSXETG00000004738 AllianceGenome:Xenbase:XB-GENE-5952633
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    c1orf112; c4h1orf112
    Summary
    Orthologous to human FIRRM (FIGNL1 interacting regulator of recombination and mitosis). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See firrm in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (118639154..118671701, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (108265519..108296765, complement)

    Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene kinesin-associated protein 3 Neighboring gene SCY1 like pseudokinase 3 Neighboring gene 14 kDa phosphohistidine phosphatase Neighboring gene selectin P

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    FIGNL1-interacting regulator of recombination and mitosis; uncharacterized protein C1orf112 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127034.1 → NP_001120506.1  FIGNL1-interacting regulator of recombination and mitosis

      See identical proteins and their annotated locations for NP_001120506.1

      Status: PROVISIONAL

      Source sequence(s)
      BC161399
      UniProtKB/TrEMBL
      A0A6I8PXG3, B1H3H7
      Related
      ENSXETP00000058898.3, ENSXETT00000060206.3
      Conserved Domains (2) summary
      pfam14868
      Location:117 → 669
      DUF4487; Domain of unknown function (DUF4487)
      sd00044
      Location:586 → 619
      HEAT; HEAT repeat [structural motif]

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      118639154..118671701 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031899857.1 → XP_031755717.1  uncharacterized protein C1orf112 homolog isoform X1

      UniProtKB/TrEMBL
      A0A803K787, A0A8J1JCV8
      Related
      ENSXETP00000116119.1, ENSXETT00000119230.1
      Conserved Domains (1) summary
      pfam14868
      Location:226 → 779
      DUF4487; Domain of unknown function (DUF4487)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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