U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LINC00696 long intergenic non-protein coding RNA 696 [ Homo sapiens (human) ]

    Gene ID: 100128378, updated on 17-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    LINC00696provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 696provided by HGNC
    Primary source
    HGNC:HGNC:34426
    See related
    AllianceGenome:HGNC:34426
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C3orf74
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LINC00696 in Genome Data Viewer
    Location:
    3p21.2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (52062094..52065112, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (52094997..52098015, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (52096110..52099128, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:52065550-52066066 Neighboring gene uncharacterized LOC105377088 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:52066067-52066581 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:52073992-52074561 Neighboring gene uncharacterized LOC124906238 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:52080336-52081535 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14426 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14427 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14428 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14429 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14430 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19926 Neighboring gene dual specificity phosphatase 7 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:52101953-52102546 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:52104737-52105238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:52112399-52113318 Neighboring gene POC1 centriolar protein A Neighboring gene Sharpr-MPRA regulatory region 14635 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19927 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:52187832-52188809 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:52188810-52189786 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:52218535-52219370 Neighboring gene Sharpr-MPRA regulatory region 13023 Neighboring gene ALDOA pseudogene 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Proteome-scale mapping of binding sites in the unstructured regions of the human proteome. Benz C, et al. Mol Syst Biol, 2022 Jan. PMID 35044719, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027331.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC115284, AK127958

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      52062094..52065112 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      52094997..52098015 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001123039.1: Suppressed sequence

      Description
      NM_001123039.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.