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    igsf9 immunoglobulin superfamily member 9 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100036605, updated on 4-Nov-2024

    Summary

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    Official Symbol
    igsf9provided by Xenbase
    Official Full Name
    immunoglobulin superfamily member 9provided by Xenbase
    Primary source
    Xenbase:XB-GENE-989817
    See related
    Ensembl:ENSXETG00000008115 AllianceGenome:Xenbase:XB-GENE-989817
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Summary
    Predicted to be located in membrane. Predicted to be active in neuron projection. Orthologous to human IGSF9 (immunoglobulin superfamily member 9). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See igsf9 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (138353067..138406885)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (115113630..115152424)

    Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene MINDY lysine 48 deubiquitinase 1 Neighboring gene dual specificity phosphatase 23 Neighboring gene transgelin 2 Neighboring gene cilia and flagella associated protein 45

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in neuron projection IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    protein turtle homolog A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001097171.1 → NP_001090640.1  protein turtle homolog A precursor

      See identical proteins and their annotated locations for NP_001090640.1

      Status: PROVISIONAL

      Source sequence(s)
      BC125743
      UniProtKB/TrEMBL
      A0JM54, F6ZDQ4
      Conserved Domains (6) summary
      smart00408
      Location:151 → 212
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:431 → 502
      IG_like; Immunoglobulin like
      cd00063
      Location:624 → 714
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:136 → 222
      I-set; Immunoglobulin I-set domain
      pfam13895
      Location:226 → 318
      Ig_2; Immunoglobulin domain
      cl11960
      Location:439 → 502
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      138353067..138406885
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031906799.1 → XP_031762659.1  protein turtle homolog A isoform X1

      UniProtKB/TrEMBL
      A0A8J1JXN2, F6ZDQ4
      Related
      ENSXETP00000017774.4, ENSXETT00000017774.4
      Conserved Domains (6) summary
      smart00409
      Location:25 → 110
      IG; Immunoglobulin
      cd00063
      Location:624 → 714
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:136 → 222
      I-set; Immunoglobulin I-set domain
      pfam13927
      Location:225 → 304
      Ig_3; Immunoglobulin domain
      cd00096
      Location:144 → 148
      Ig; Ig strand A' [structural motif]
      cl11960
      Location:340 → 402
      Ig; Immunoglobulin domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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