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    taf7 TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor [ Danio rerio (zebrafish) ]

    Gene ID: 100002261, updated on 2-Nov-2024

    Summary

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    Official Symbol
    taf7provided by ZNC
    Official Full Name
    TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factorprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-020419-18
    See related
    Ensembl:ENSDARG00000019572 AllianceGenome:ZFIN:ZDB-GENE-020419-18
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    CHUNP6888
    Summary
    Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within transcription initiation at RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF7 (TATA-box binding protein associated factor 7). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See taf7 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (40852504..40874102)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (40485250..40506848)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene E74-like ETS transcription factor 1 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene uncharacterized LOC100534741 Neighboring gene dystrophin related protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Quantitative mass spectrometry of TATA binding protein-containing complexes and subunit phosphorylations during the cell cycle. Pijnappel WP, et al. Proteome Sci, 2009 Dec 24. PMID 20034391, Free PMC Article
    2. Insertional mutagenesis in zebrafish rapidly identifies genes essential for early vertebrate development. Golling G, et al. Nat Genet, 2002 Jun. PMID 12006978
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Clone Names

    • MGC86629, MGC174760

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    contributes_to RNA polymerase II general transcription initiation factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA polymerase II preinitiation complex assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of transcription factor TFIID complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transcription initiation factor TFIID subunit 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_173260.1 → NP_775367.1  transcription initiation factor TFIID subunit 7

      See identical proteins and their annotated locations for NP_775367.1

      Status: PROVISIONAL

      Source sequence(s)
      AF506232
      UniProtKB/TrEMBL
      A8WGM5, F6P0Q4, Q8JHG4
      Related
      ENSDARP00000133252.1, ENSDART00000166065.3
      Conserved Domains (2) summary
      COG5414
      Location:15 → 349
      Taf7; TATA-binding protein-associated factor Taf7, part of the TFIID transcription initiation complex [Transcription]
      pfam04658
      Location:22 → 186
      TAFII55_N; TAFII55 protein conserved region

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      40852504..40874102
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005173300.5 → XP_005173357.1  transcription initiation factor TFIID subunit 7 isoform X1

      See identical proteins and their annotated locations for XP_005173357.1

      UniProtKB/TrEMBL
      A8WGM5, F6P0Q4, Q8JHG4
      Related
      ENSDARP00000108885.1, ENSDART00000128588.4
      Conserved Domains (2) summary
      COG5414
      Location:15 → 349
      Taf7; TATA-binding protein-associated factor Taf7, part of the TFIID transcription initiation complex [Transcription]
      pfam04658
      Location:22 → 186
      TAFII55_N; TAFII55 protein conserved region
    Nucleotide Protein Strain
    Heading Accession and Version

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