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Links from Protein Clusters
- Official
Symbol
- AGL6
- Official
Full Name
- AGAMOUS-like 6
- Primary source
-
TAIR:AT2G45650
- Locus tag
- AT2G45650
- See related
-
Araport:AT2G45650
- Gene type
- protein coding
- RefSeq status
- REVIEWED
- Organism
-
Arabidopsis thaliana (ecotype: Columbia)
- Lineage
- Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
- Also known as
- AGAMOUS-like 6; F17K2.18; REDUCED SHOOT BRANCHING 1; RSB1
- Summary
- Sequence suggests this encodes a MADS-box transcription factor. Negatively regulates the FLC/MAF clade genes and positively regulates FT in Arabidopsis.
-
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- Exon count:
- 8
- Sequence:
- Chromosome: 2; NC_003071.7 (18804190..18806586)
Chromosome 2 - NC_003071.7
- Genomic Sequence:
- NC_003071.7
-
Epistatic natural allelic variation reveals a function of AGAMOUS-LIKE6 in axillary bud formation in Arabidopsis.
Huang X, et al. Plant Cell, 2012 Jun. PMID 22730404, Free PMC Article
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A genetic screen for leaf movement mutants identifies a potential role for AGAMOUS-LIKE 6 (AGL6) in circadian-clock control.
Yoo SK, et al. Mol Cells, 2011 Mar. PMID 21331777, Free PMC Article
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Control of lateral organ development and flowering time by the Arabidopsis thaliana MADS-box Gene AGAMOUS-LIKE6.
Koo SC, et al. Plant J, 2010 Jun 1. PMID 20230491
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Intronic regulatory elements determine the divergent expression patterns of AGAMOUS-LIKE6 subfamily members in Arabidopsis.
Schauer SE, et al. Plant J, 2009 Sep. PMID 19473325
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Regulatory network for FOREVER YOUNG FLOWER-like genes in regulating Arabidopsis flower senescence and abscission.
Chen WH, et al. Commun Biol, 2022 Jul 5. PMID 35790878, Free PMC Article
See all (13) citations in PubMed
Products |
Interactant |
Other Gene |
Complex |
Source |
Pubs |
Description |
- Preferred Names
- AGAMOUS-like 6
- NP_182089.1
-
- AGAMOUS-like 6 (AGL6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: vegetative to reproductive phase transition of meristem, floral organ development; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 13 (TAIR:AT3G61120.1); Has 7294 Blast hits to 7293 proteins in 914 species: Archae - 0; Bacteria - 0; Metazoa - 630; Fungi - 307; Plants - 6281; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
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The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference assembly
Genomic
-
NC_003071.7 Reference assembly
- Range
-
18804190..18806586
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_130127.2 → NP_182089.1 AGAMOUS-like 6 [Arabidopsis thaliana]
See identical proteins and their annotated locations for NP_182089.1
Status: REVIEWED
- UniProtKB/Swiss-Prot
-
P29386
- UniProtKB/TrEMBL
- A0A5S9X7Z8, A0A654F284, A0MET6, I7EL34, I7FEX2, Q1PEU3
- Conserved Domains (2) summary
-
- cd00265
Location:2 → 72
- MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
- pfam01486
Location:87 → 171
- K-box; K-box region
The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.
Molecular Biology Databases
- Bio-Analytic Resource
- BioGPS
- Kyoto Encyclopedia of Genes and Genomes
- OMA Browser: Orthologous MAtrix
- OrthoDB catalog of orthologs
Research Materials
- Addgene Non-profit plasmid repository
- GenScript latest version of gene cDNA ORF Clone