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    ATG4C autophagy related 4C cysteine peptidase [ Macaca fascicularis (crab-eating macaque) ]

    Gene ID: 101925212, updated on 1-Aug-2024

    Summary

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    Gene symbol
    ATG4C
    Gene description
    autophagy related 4C cysteine peptidase
    See related
    Ensembl:ENSMFAG00000038279
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca fascicularis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See ATG4C in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 1 NC_088375.1 (171820443..171939827, complement)
    102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 1 NC_052255.1 (160119431..160238187, complement)

    Chromosome 1 - NC_088375.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102133860 Neighboring gene uncharacterized LOC123572690 Neighboring gene large ribosomal subunit protein uL13-like Neighboring gene dedicator of cytokinesis 7 Neighboring gene angiopoietin like 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rate of evolution in brain-expressed genes in humans and other primates. Wang HY, et al. PLoS Biol, 2007 Feb. PMID 17194215, Free PMC Article
    2. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein-phosphatidylethanolamide deconjugating activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cysteine protease ATG4C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference T2T-MFA8v1.0

    Genomic

    1. NC_088375.1 Reference T2T-MFA8v1.0

      Range
      171820443..171939827 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015434929.3 → XP_015290415.1  cysteine protease ATG4C isoform X1

      Conserved Domains (1) summary
      pfam03416
      Location:76 → 395
      Peptidase_C54; Peptidase family C54

    2. XM_015434914.3 → XP_015290400.1  cysteine protease ATG4C isoform X1

      Conserved Domains (1) summary
      pfam03416
      Location:76 → 395
      Peptidase_C54; Peptidase family C54

    3. XM_015434922.3 → XP_015290408.1  cysteine protease ATG4C isoform X1

      Conserved Domains (1) summary
      pfam03416
      Location:76 → 395
      Peptidase_C54; Peptidase family C54

    4. XM_045369829.2 → XP_045225764.1  cysteine protease ATG4C isoform X1

      Conserved Domains (1) summary
      pfam03416
      Location:76 → 395
      Peptidase_C54; Peptidase family C54

    5. XM_015434924.3 → XP_015290410.1  cysteine protease ATG4C isoform X1

      Conserved Domains (1) summary
      pfam03416
      Location:76 → 395
      Peptidase_C54; Peptidase family C54

    6. XM_015434916.3 → XP_015290402.1  cysteine protease ATG4C isoform X1

      Conserved Domains (1) summary
      pfam03416
      Location:76 → 395
      Peptidase_C54; Peptidase family C54

    7. XM_015434908.3 → XP_015290394.1  cysteine protease ATG4C isoform X1

      Conserved Domains (1) summary
      pfam03416
      Location:76 → 395
      Peptidase_C54; Peptidase family C54

    8. XM_015434906.3 → XP_015290392.1  cysteine protease ATG4C isoform X1

      Conserved Domains (1) summary
      pfam03416
      Location:76 → 395
      Peptidase_C54; Peptidase family C54

    9. XM_005543178.4 → XP_005543235.1  cysteine protease ATG4C isoform X3

      See identical proteins and their annotated locations for XP_005543235.1

      UniProtKB/TrEMBL
      A0A2K5TS94, A0A8J8YN27, G7NW13
      Conserved Domains (1) summary
      pfam03416
      Location:77 → 395
      Peptidase_C54; Peptidase family C54

    10. XM_005543179.3 → XP_005543236.1  cysteine protease ATG4C isoform X3

      See identical proteins and their annotated locations for XP_005543236.1

      UniProtKB/TrEMBL
      A0A2K5TS94, A0A8J8YN27, G7NW13
      Related
      ENSMFAP00000002929.1
      Conserved Domains (1) summary
      pfam03416
      Location:77 → 395
      Peptidase_C54; Peptidase family C54

    11. XM_015434940.3 → XP_015290426.1  cysteine protease ATG4C isoform X7

      Conserved Domains (1) summary
      pfam03416
      Location:77 → 395
      Peptidase_C54; Peptidase family C54

    12. XM_045369852.2 → XP_045225787.1  cysteine protease ATG4C isoform X6

    13. XM_045369845.2 → XP_045225780.1  cysteine protease ATG4C isoform X5

    14. XM_065521360.1 → XP_065377432.1  cysteine protease ATG4C isoform X4

      UniProtKB/TrEMBL
      A0A7N9CEU6

    15. XM_065521349.1 → XP_065377421.1  cysteine protease ATG4C isoform X2

    16. XM_045369860.2 → XP_045225795.1  cysteine protease ATG4C isoform X8

    Nucleotide Protein
    Heading Accession and Version

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