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    LOC107005445 nuclear transcription factor Y subunit A-7-like [ Solanum pennellii ]

    Gene ID: 107005445, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC107005445
    Gene description
    nuclear transcription factor Y subunit A-7-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum pennellii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC107005445 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current SPENNV200 (GCF_001406875.1) 12 NC_028648.1 (2606849..2612524, complement)

    Chromosome 12 - NC_028648.1Genomic Context describing neighboring genes Neighboring gene WD repeat-containing protein VIP3-like Neighboring gene long chain acyl-CoA synthetase 8-like Neighboring gene vacuolar protein sorting-associated protein 2 homolog 1 Neighboring gene RING-H2 finger protein ATL52-like Neighboring gene uncharacterized LOC107005318

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_028648.1 Chromosome 12 Reference SPENNV200

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear transcription factor Y subunit A-5-like; nuclear transcription factor Y subunit A-7-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Solanum pennellii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SPENNV200

    Genomic

    1. NC_028648.1 Reference SPENNV200

      Range
      2606849..2612524 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027913878.1 → XP_027769679.1  nuclear transcription factor Y subunit A-5-like isoform X2

    2. XM_027913877.1 → XP_027769678.1  nuclear transcription factor Y subunit A-5-like isoform X1

    3. XM_015204043.2 → XP_015059529.1  nuclear transcription factor Y subunit A-5-like isoform X3

      Conserved Domains (1) summary
      pfam02045
      Location:148 → 202
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    4. XM_015204044.2 → XP_015059530.1  nuclear transcription factor Y subunit A-7-like isoform X4

      Conserved Domains (1) summary
      pfam02045
      Location:118 → 172
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    5. XM_027913879.1 → XP_027769680.1  nuclear transcription factor Y subunit A-7-like isoform X4

    Nucleotide Protein
    Heading Accession and Version

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