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    L4A capsid protein precursor pVIII;encapsidation protein 22K;hexon assembly protein 100K;protein 33K [ Human mastadenovirus F ]

    Gene ID: 2715920, updated on 18-Aug-2023

    Summary

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    Gene symbol
    L4A
    Gene description
    capsid protein precursor pVIII;encapsidation protein 22K;hexon assembly protein 100K;protein 33K
    Locus tag
    HAdVF_gp09
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Human mastadenovirus F (strain: Dugan, serotype: Human adenovirus 40, acronym: HAdV-40, acronym: HAdV-F, nat-host: Homo sapiens)
    Lineage
    Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Mastadenovirus
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    Genomic context

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    Sequence:
    NC_001454.1 (5568..27588)

    NC_001454.1Genomic Context describing neighboring genes Neighboring gene control protein E1B 19K;control protein E1B 55K Neighboring gene encapsidation protein IVa2 Neighboring gene capsid protein IX Neighboring gene DNA polymerase;terminal protein precursor pTP Neighboring gene fiber-2 Neighboring gene fiber Neighboring gene capsid protein precursor pVI;hexon;protease Neighboring gene core protein V;core protein precursor pVII;core protein precursor pX;penton base Neighboring gene capsid protein precursor pIIIa;encapsidation protein 52K Neighboring gene miscRNA Neighboring gene Neighboring gene single-stranded DNA-binding protein Neighboring gene membrane glycoprotein E3 CR1-alpha;membrane glycoprotein E3 CR1-beta Neighboring gene control protein E3 14.7K;membrane protein E3 RID-alpha;membrane protein E3 RID-beta Neighboring gene protein U Neighboring gene control protein E4 34K;control protein E4orf2;control protein E4orf3;control protein E4orf4;control protein E4orf6/7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001454.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The DNA sequence of adenovirus type 40. Davison AJ, et al. J Mol Biol, 1993 Dec 20. PMID 8263936

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    regulatory

    • Loc: 13154-13159 regulatory_class = polyA_signal_sequence
    • Loc: 13159-13164 regulatory_class = polyA_signal_sequence
    • Loc: 16688-16693 regulatory_class = polyA_signal_sequence
    • Loc: 21050-21055 regulatory_class = polyA_signal_sequence
    • Loc: 25799-25804 regulatory_class = TATA_box
    • Loc: 27583-27588 regulatory_class = polyA_signal_sequence
    • Loc: 5568-5573 regulatory_class = TATA_box

    General protein information

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    Preferred Names
    capsid protein precursor pVIII;encapsidation protein 22K;hexon assembly protein 100K;protein 33K
    NP_040865.1
    • genus-common
    NP_040866.1
    • genus-common
    NP_040867.1
    • genus-common
    NP_040868.1
    • genus-common

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001454.1 Reference assembly

      Range
      5568..27588
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_040865.1 hexon assembly protein 100K [Human mastadenovirus F]

      See identical proteins and their annotated locations for NP_040865.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P11823
      UniProtKB/TrEMBL
      A0A142G3K8, A0A6M6AAR0
      Conserved Domains (1) summary
      pfam02438
      Location:69 → 656
      Adeno_100; Late 100kD protein

    2. NP_040866.1 protein 33K [Human mastadenovirus F]

      See identical proteins and their annotated locations for NP_040866.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P11805
      UniProtKB/TrEMBL
      A0A142G3L0, A0A6M6AB38
      Conserved Domains (1) summary
      pfam11081
      Location:1 → 208
      DUF2890; Protein of unknown function (DUF2890)

    3. NP_040867.1 encapsidation protein 22K [Human mastadenovirus F]

      See identical proteins and their annotated locations for NP_040867.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A142G3K9, A0A6M6AEB7, Q64859
      Conserved Domains (1) summary
      pfam11081
      Location:24 → 180
      DUF2890; Protein of unknown function (DUF2890)

    4. NP_040868.1 capsid protein precursor pVIII [Human mastadenovirus F]

      See identical proteins and their annotated locations for NP_040868.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P11821
      UniProtKB/TrEMBL
      A0A142G3L1, A0A6M6ABN3, A0A7U3NJK0
      Conserved Domains (1) summary
      pfam01310
      Location:3 → 222
      Adeno_PVIII; Adenovirus hexon associated protein, protein VIII
    Nucleotide Protein
    Heading Accession and Version

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