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    CREBBP CREB binding protein [ Calidris pugnax (ruff) ]

    Gene ID: 106884866, updated on 3-Aug-2024

    Summary

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    Gene symbol
    CREBBP
    Gene description
    CREB binding protein
    See related
    Ensembl:ENSCPUG00000017380
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Calidris pugnax
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
    Orthologs
    human mouse all
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    Genomic context

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    See CREBBP in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090794.1 (12675515..12769906, complement)

    NW_015090794.1Genomic Context describing neighboring genes Neighboring gene SLX4 structure-specific endonuclease subunit Neighboring gene TNF receptor associated protein 1 Neighboring gene adenylate cyclase 9 Neighboring gene uncharacterized LOC106884723

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_015090794.1 Unplaced Scaffold Reference ASM143184v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CREB-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM143184v1

    Genomic

    1. NW_015090794.1 Reference ASM143184v1

      Range
      12675515..12769906 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014936593.1 → XP_014792079.1  CREB-binding protein

      Related
      ENSCPUP00000025750.1, ENSCPUT00000030369.1
      Conserved Domains (10) summary
      cd05495
      Location:1100 → 1207
      Bromo_cbp_like; Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to ...
      smart00551
      Location:1779 → 1857
      ZnF_TAZ; TAZ zinc finger, present in p300 and CBP
      cd02337
      Location:1718 → 1758
      ZZ_CBP; Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that ...
      pfam09606
      Location:633 → 1013
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd15802
      Location:1219 → 1291
      RING_CBP-p300; atypical RING domain found in CREB-binding protein and p300 histone acetyltransferases
      cd15557
      Location:1293 → 1324
      PHD_CBP_p300; PHD finger found in CREB-binding protein (CBP) and histone acetyltransferase p300
      pfam02135
      Location:364 → 431
      zf-TAZ; TAZ zinc finger
      pfam02172
      Location:587 → 667
      KIX; KIX domain
      pfam08214
      Location:1355 → 1662
      HAT_KAT11; Histone acetylation protein
      pfam09030
      Location:2054 → 2132
      Creb_binding; Creb binding
    Nucleotide Protein
    Heading Accession and Version

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