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    LOC100806628 3-dehydroquinate synthase [ Glycine max (soybean) ]

    Gene ID: 100806628, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100806628
    Gene description
    3-dehydroquinate synthase
    Locus tag
    GLYMA_11G078700v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100806628 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 11 NC_038247.2 (5916615..5920500)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 11 NC_038247.1 (5924115..5928008)

    Chromosome 11 - NC_038247.2Genomic Context describing neighboring genes Neighboring gene protein ALTERED PHOSPHATE STARVATION RESPONSE 1 Neighboring gene L10-interacting MYB domain-containing protein Neighboring gene pentatricopeptide repeat-containing protein At1g80550, mitochondrial Neighboring gene uncharacterized LOC100809148 Neighboring gene 3-isopropylmalate dehydrogenase 2, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3-dehydroquinate synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in aromatic amino acid family biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    3-dehydroquinate synthase
    NP_001341486.1
    XP_014619379.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001354557.1 → NP_001341486.1  3-dehydroquinate synthase

      Status: VALIDATED

      Source sequence(s)
      ACUP04003803, HQ636605
      UniProtKB/TrEMBL
      A0A0R0HLZ4, G3E7M4
      Conserved Domains (1) summary
      PLN02834
      Location:3 → 437
      PLN02834; 3-dehydroquinate synthase

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038247.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      5916615..5920500
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014763893.2 → XP_014619379.1  3-dehydroquinate synthase isoform X1

      UniProtKB/TrEMBL
      G3E7M4
      Conserved Domains (1) summary
      PLN02834
      Location:3 → 416
      PLN02834; 3-dehydroquinate synthase
    Nucleotide Protein
    Heading Accession and Version

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