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    LOC100305396 protein kinase [ Glycine max (soybean) ]

    Gene ID: 100305396, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC100305396
    Gene description
    protein kinase
    Locus tag
    GLYMA_08G060500v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100305396 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 8 NC_038244.2 (4662335..4667117)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 8 NC_038244.1 (4664828..4669379)

    Chromosome 8 - NC_038244.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100803004 Neighboring gene protein PLANT CADMIUM RESISTANCE 7-like Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene pentatricopeptide repeat-containing protein At2g17140 Neighboring gene glycosyl hydrolase 5 family protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in recognition of pollen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein kinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001251639.2 → NP_001238568.2  protein kinase precursor

      Status: VALIDATED

      Source sequence(s)
      ACUP04002788, BI471624, BM528385, EH224202

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038244.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      4662335..4667117
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041017568.1 → XP_040873502.1  protein kinase isoform X3

      UniProtKB/TrEMBL
      A0A0R0IRG6
      Conserved Domains (3) summary
      cd00028
      Location:1 → 101
      B_lectin; Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically ...
      cd01098
      Location:309 → 382
      PAN_AP_plant; Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and ...
      cd14066
      Location:488 → 752
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    2. XM_014778306.3 → XP_014633792.1  protein kinase isoform X1

      Conserved Domains (4) summary
      cd01098
      Location:361 → 434
      PAN_AP_plant; Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and ...
      cd14066
      Location:540 → 804
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam00954
      Location:210 → 319
      S_locus_glycop; S-locus glycoprotein domain
      pfam01453
      Location:78 → 176
      B_lectin; D-mannose binding lectin

    3. XM_014778307.3 → XP_014633793.1  protein kinase isoform X2

      UniProtKB/TrEMBL
      A0A0R0INR7
      Conserved Domains (4) summary
      cd01098
      Location:361 → 434
      PAN_AP_plant; Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and ...
      cd14066
      Location:539 → 803
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam00954
      Location:210 → 319
      S_locus_glycop; S-locus glycoprotein domain
      pfam01453
      Location:78 → 176
      B_lectin; D-mannose binding lectin
    Nucleotide Protein
    Heading Accession and Version

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