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    LOC106755582 NEDD8-specific protease 1 [ Vigna radiata ]

    Gene ID: 106755582, updated on 11-Jan-2024

    Summary

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    Gene symbol
    LOC106755582
    Gene description
    NEDD8-specific protease 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vigna radiata
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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    Genomic context

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    See LOC106755582 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    101 current Vradiata_ver6 (GCF_000741045.1) 2 NC_028352.1 (5612631..5614759)

    Chromosome 2 - NC_028352.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106756057 Neighboring gene V-type proton ATPase subunit a1 Neighboring gene arogenate dehydratase/prephenate dehydratase 2, chloroplastic Neighboring gene uncharacterized LOC111242779

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_028352.1 Chromosome 2 Reference Vradiata_ver6 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables deNEDDylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NEDD8-specific protease 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Vigna radiata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Vradiata_ver6 Primary Assembly

    Genomic

    1. NC_028352.1 Reference Vradiata_ver6 Primary Assembly

      Range
      5612631..5614759
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014637759.2 → XP_014493245.1  NEDD8-specific protease 1

      UniProtKB/TrEMBL
      A0A1S3THK8
      Conserved Domains (1) summary
      cl23802
      Location:82 → 174
      Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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