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    Bovatus_RS16650 RagB/SusD family nutrient uptake outer membrane protein [ Bacteroides ovatus ]

    Gene ID: 29454954, updated on 10-Oct-2024

    Summary

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    Gene symbol
    Bovatus_RS16650
    Gene description
    RagB/SusD family nutrient uptake outer membrane protein
    Locus tag
    Bovatus_RS16650
    Gene type
    protein coding
    Organism
    Bacteroides ovatus (strain: ATCC 8483, nat-host: Homo sapiens, culture-collection: ATCC:8483, type-material: type strain of Bacteroides ovatus)
    Lineage
    Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
    Old locus tag
    Bovatus_03421
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    Genomic context

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    NZ_CP012938.1Genomic Context describing neighboring genes Neighboring gene DUF6377 domain-containing protein Neighboring gene TonB-dependent receptor Neighboring gene glycoside hydrolase family 30 beta sandwich domain-containing protein Neighboring gene DUF5125 domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP012938.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of four outer membrane proteins involved in binding starch to the cell surface of Bacteroides thetaiotaomicron. Shipman JA, et al. J Bacteriol, 2000 Oct. PMID 10986238, Free PMC Article
    2. Biochemical analysis of interactions between outer membrane proteins that contribute to starch utilization by Bacteroides thetaiotaomicron. Cho KH, et al. J Bacteriol, 2001 Dec. PMID 11717282, Free PMC Article
    3. Genetic determinants of in vivo fitness and diet responsiveness in multiple human gut Bacteroides. Wu M, et al. Science, 2015 Oct 2. PMID 26430127, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    RagB/SusD family nutrient uptake outer membrane protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP012938.1 Reference assembly

      Range
      4327945..4329480
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_004298108.1 MULTISPECIES: RagB/SusD family nutrient uptake outer membrane protein [Bacteroides]

      UniProtKB/TrEMBL
      A0AAN3ABB5, A0AAP3SU97
      Conserved Domains (2) summary
      cd08977
      Location:54 → 460
      SusD; starch binding outer membrane protein SusD
      pfam07980
      Location:293 → 511
      SusD_RagB; SusD family
    Nucleotide Protein
    Heading Accession and Version