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    Rab11a Rab11 GTPase [ Solanum lycopersicum (tomato) ]

    Gene ID: 543749, updated on 9-Nov-2023

    Summary

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    Gene symbol
    Rab11a
    Gene description
    Rab11 GTPase
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103 current SL3.0 (GCF_000188115.4) 7 NC_015444.3 (63500376..63505643, complement)
    102 previous assembly SL2.50 (GCF_000188115.3) 7 NC_015444.2 (63373505..63378772, complement)

    Chromosome 7 - NC_015444.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101267910 Neighboring gene probable WRKY transcription factor 65 Neighboring gene probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 Neighboring gene pentatricopeptide repeat-containing protein At2g41080

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Developmental abnormalities and reduced fruit softening in tomato plants expressing an antisense Rab11 GTPase gene. Lu C, et al. Plant Cell, 2001 Aug. PMID 11487695, Free PMC Article
    2. Tomato Rab11a characterization evidenced a difference between SYP121-dependent and SYP122-dependent exocytosis. Rehman RU, et al. Plant Cell Physiol, 2008 May. PMID 18385165
    3. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The results suggest that Rab11 regulates anterograde transport from the TGN to the plasma membrane and strongly implicate SYP122, rather than SYP121.
      Title: Tomato Rab11a characterization evidenced a difference between SYP121-dependent and SYP122-dependent exocytosis.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Rab11 GTPase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001246869.2 → NP_001233798.2  Rab11 GTPase

      Status: VALIDATED

      Source sequence(s)
      AK325155, BE450064, DB710029
      UniProtKB/TrEMBL
      A0A3Q7HG43, Q9SCB1
      Conserved Domains (1) summary
      cd01868
      Location:11 → 175
      Rab11_like; Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

    RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SL3.0 Primary Assembly

    Genomic

    1. NC_015444.3 Reference SL3.0 Primary Assembly

      Range
      63500376..63505643 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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