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    LOC106318408 telomere repeat-binding protein 1 [ Brassica oleracea (wild cabbage) ]

    Gene ID: 106318408, updated on 30-Oct-2024

    Summary

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    Gene symbol
    LOC106318408
    Gene description
    telomere repeat-binding protein 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica oleracea
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC106318408 in Genome Data Viewer
    Location:
    chromosome: C9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current BOL (GCF_000695525.1) C9 NC_027756.1 (42408696..42412062)

    Chromosome C9 - NC_027756.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106315068 Neighboring gene uncharacterized LOC106315069 Neighboring gene thymidylate kinase Neighboring gene scarecrow-like protein 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_027756.1 Chromosome C9 Reference BOL Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    telomere repeat-binding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BOL Primary Assembly

    Genomic

    1. NC_027756.1 Reference BOL Primary Assembly

      Range
      42408696..42412062
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013756369.1 → XP_013611823.1  telomere repeat-binding protein 1 isoform X1

      Conserved Domains (3) summary
      smart00717
      Location:468 → 520
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd11660
      Location:469 → 519
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
      cl00155
      Location:312 → 362
      UBQ; Ubiquitin-like proteins

    2. XM_013756371.1 → XP_013611825.1  telomere repeat-binding protein 1 isoform X1

      Conserved Domains (3) summary
      smart00717
      Location:468 → 520
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd11660
      Location:469 → 519
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
      cl00155
      Location:312 → 362
      UBQ; Ubiquitin-like proteins

    3. XM_013756370.1 → XP_013611824.1  telomere repeat-binding protein 1 isoform X1

      Conserved Domains (3) summary
      smart00717
      Location:468 → 520
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd11660
      Location:469 → 519
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
      cl00155
      Location:312 → 362
      UBQ; Ubiquitin-like proteins

    4. XM_013756373.1 → XP_013611827.1  telomere repeat-binding protein 1 isoform X2

      Conserved Domains (3) summary
      smart00717
      Location:467 → 519
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd11660
      Location:468 → 518
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
      cl00155
      Location:311 → 361
      UBQ; Ubiquitin-like proteins

    5. XM_013756372.1 → XP_013611826.1  telomere repeat-binding protein 1 isoform X1

      Conserved Domains (3) summary
      smart00717
      Location:468 → 520
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd11660
      Location:469 → 519
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
      cl00155
      Location:312 → 362
      UBQ; Ubiquitin-like proteins
    Nucleotide Protein
    Heading Accession and Version

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