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    LOC106326870 transcription factor HEC3 [ Brassica oleracea (wild cabbage) ]

    Gene ID: 106326870, updated on 30-Oct-2024

    Summary

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    Gene symbol
    LOC106326870
    Gene description
    transcription factor HEC3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica oleracea
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC106326870 in Genome Data Viewer
    Location:
    chromosome: C2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current BOL (GCF_000695525.1) C2 NC_027749.1 (1978034..1978905, complement)

    Chromosome C2 - NC_027749.1Genomic Context describing neighboring genes Neighboring gene magnesium transporter MRS2-7-like Neighboring gene magnesium transporter MRS2-7-like Neighboring gene beta-D-xylosidase 4-like Neighboring gene probable pectinesterase/pectinesterase inhibitor 51 Neighboring gene histone-lysine N-methyltransferase ATXR5-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_027749.1 Chromosome C2 Reference BOL Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor HEC3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BOL Primary Assembly

    Genomic

    1. NC_027749.1 Reference BOL Primary Assembly

      Range
      1978034..1978905 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013764820.1 → XP_013620274.1  transcription factor HEC3

      UniProtKB/TrEMBL
      A0A0D3AIB8, A0A3P6DI12
      Conserved Domains (1) summary
      cd11454
      Location:123 → 180
      bHLH_AtIND_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein INDEHISCENT (IND) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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