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    LOC25492685 AUGMIN subunit 2 [ Medicago truncatula (barrel medic) ]

    Gene ID: 25492685, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC25492685
    Gene description
    AUGMIN subunit 2
    Locus tag
    MtrunA17_Chr4g0034201
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC25492685 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (33897888..33901458)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (25754571..25758134)

    Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene cold-regulated 413 plasma membrane protein 1 Neighboring gene long chain acyl-CoA synthetase 2 Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene mitochondrial import receptor subunit TOM6 homolog Neighboring gene uncharacterized LOC25492688

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression dynamics of the Medicago truncatula transcriptome during the symbiotic interaction with Sinorhizobium meliloti: which role for nitric oxide? Boscari A, et al. Plant Physiol, 2013 Jan. PMID 23136381, Free PMC Article
    2. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in microtubule nucleation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in microtubule organizing center organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spindle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitotic spindle microtubule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AUGMIN subunit 2
    Names
    putative HAUS augmin-like complex subunit 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      33897888..33901458
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013600876.3 → XP_013456330.1  AUGMIN subunit 2

      UniProtKB/TrEMBL
      A0A072ULY1
      Conserved Domains (1) summary
      pfam15003
      Location:19 → 212
      HAUS2; HAUS augmin-like complex subunit 2
    Nucleotide Protein
    Heading Accession and Version

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