U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC11420257 uncharacterized LOC11420257 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11420257, updated on 7-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC11420257
    Gene description
    uncharacterized LOC11420257
    Locus tag
    MtrunA17_Chr4g0067831
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC11420257 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (58134055..58135726, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (49996458..49998392, complement)

    Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene probable polygalacturonase Neighboring gene uncharacterized LOC11420256 Neighboring gene pathogenesis-related protein STH-2 Neighboring gene probable 60S ribosomal protein L14

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC11420257
    Names
    heavy-metal-associated domain protein
    putative heavy metal-associated domain, HMA

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      58134055..58135726 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024782201.2 → XP_024637969.1  uncharacterized protein LOC11420257

      UniProtKB/TrEMBL
      A0A0C3X6N3, G7JLL0
      Conserved Domains (1) summary
      cd00371
      Location:14 → 48
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...

    2. XM_003609660.4 → XP_003609708.2  uncharacterized protein LOC11420257

      UniProtKB/TrEMBL
      A0A0C3X6N3, G7JLL0
      Conserved Domains (1) summary
      cd00371
      Location:14 → 48
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases