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    LOC25497434 mannose-6-phosphate isomerase 1 [ Medicago truncatula (barrel medic) ]

    Gene ID: 25497434, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC25497434
    Gene description
    mannose-6-phosphate isomerase 1
    Locus tag
    MtrunA17_Chr7g0215521
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC25497434 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 7 NC_053048.1 (1506282..1511849, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 7 NC_016413.2 (1430158..1435692, complement)

    Chromosome 7 - NC_053048.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC25497431 Neighboring gene F-box/kelch-repeat protein At3g23880 Neighboring gene uncharacterized LOC25497433 Neighboring gene F-box/FBD/LRR-repeat protein At5g56420 Neighboring gene FBD-associated F-box protein At4g10400

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mannose-6-phosphate isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in GDP-mannose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mannose-6-phosphate isomerase 1
    Names
    putative mannose-6-phosphate isomerase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053048.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      1506282..1511849 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013592014.3 → XP_013447468.1  mannose-6-phosphate isomerase 1

      UniProtKB/TrEMBL
      A0A072TVL2
      Conserved Domains (1) summary
      PLN02288
      Location:10 → 403
      PLN02288; mannose-6-phosphate isomerase
    Nucleotide Protein
    Heading Accession and Version

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