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    LOC25502442 metacaspase-5 [ Medicago truncatula (barrel medic) ]

    Gene ID: 25502442, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC25502442
    Gene description
    metacaspase-5
    Locus tag
    MtrunA17_Chr8g0356311
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC25502442 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (17903599..17905681)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 8 NC_016414.2 (18452505..18454579)

    Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase RHS3 Neighboring gene probable GMP synthase [glutamine-hydrolyzing] Neighboring gene protein FORGETTER 1 Neighboring gene DNA topoisomerase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression dynamics of the Medicago truncatula transcriptome during the symbiotic interaction with Sinorhizobium meliloti: which role for nitric oxide? Boscari A, et al. Plant Physiol, 2013 Jan. PMID 23136381, Free PMC Article
    2. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    metacaspase-5
    Names
    ICE-like protease (caspase) p20 domain protein
    putative Caspase-like domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      17903599..17905681
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013589850.3 → XP_013445304.1  metacaspase-5

      UniProtKB/TrEMBL
      A0A072U0M2
      Conserved Domains (1) summary
      pfam00656
      Location:3 → 144
      Peptidase_C14; Caspase domain
    Nucleotide Protein
    Heading Accession and Version

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