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    bsmA DUF1471 domain-containing putative lipoprotein BsmA [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948708, updated on 6-Aug-2024

    Summary

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    Gene symbol
    bsmA
    Gene description
    DUF1471 domain-containing putative lipoprotein BsmA
    Primary source
    ASAP:ABE-0013706
    Locus tag
    b4189
    See related
    ECOCYC:G7852
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK4185; yjfO
    Summary
    First 24 aa are a predicted type II signal peptide. [More information is available at EcoGene: EG12489].
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    Genomic context

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    Sequence:
    NC_000913.3 (4416441..4416770, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative acyl-CoA dehydrogenase AidB Neighboring gene protease activator YjfN Neighboring gene carboxylesterase Neighboring gene DNA-binding transcriptional repressor UlaR Neighboring gene L-ascorbate-6-phosphate lactonase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Low molecular weight proteins: a challenge for post-genomic research. Rudd KE, et al. Electrophoresis, 1998 Apr. PMID 9588799
    2. A previously uncharacterized gene, yjfO (bsmA), influences Escherichia coli biofilm formation and stress response. Weber MM, et al. Microbiology (Reading), 2010 Jan. PMID 19833773, Free PMC Article
    3. Over 1000 genes are involved in the DNA damage response of Escherichia coli. Khil PP, et al. Mol Microbiol, 2002 Apr. PMID 11967071
    4. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    5. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. yjfO mutants are altered in biofilm structure and cell motility, and in their ability as biofilms to respond to pH and oxidative stresses.
      Title: A previously uncharacterized gene, yjfO (bsmA), influences Escherichia coli biofilm formation and stress response.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within single-species biofilm formation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DUF1471 domain-containing putative lipoprotein BsmA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4416441..4416770 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418610.4 DUF1471 domain-containing putative lipoprotein BsmA [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418610.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1V2GK16
      Conserved Domains (1) summary
      PRK14864
      Location:6 → 109
      PRK14864; biofilm peroxide resistance protein BsmA
    Nucleotide Protein
    Heading Accession and Version

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