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    LOC100193808 Homeobox-leucine zipper protein ATHB-12 [ Zea mays ]

    Gene ID: 100193808, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100193808
    Gene description
    Homeobox-leucine zipper protein ATHB-12
    Locus tag
    ZEAMMB73_Zm00001d006195
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G034113
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    Genomic context

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    See LOC100193808 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 2 NC_050097.1 (201454420..201456072, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 2 NC_024460.2 (201274832..201276484, complement)

    Chromosome 2 - NC_050097.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 78A9 Neighboring gene mediator complex subunit 10 CG5057-PA Neighboring gene microRNA MIR11969 Neighboring gene uncharacterized LOC100286363 Neighboring gene Kinesin-like protein KIN-7G

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    2. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Homeobox-leucine zipper protein HOX6
    Names
    homeodomain-leucine zipper transcription factor TaHDZipI-1
    putative homeobox DNA-binding and leucine zipper domain family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001156038.2 → NP_001149510.2  Homeobox-leucine zipper protein HOX6

      See identical proteins and their annotated locations for NP_001149510.2

      Status: VALIDATED

      Source sequence(s)
      BT041114, DR801186
      UniProtKB/TrEMBL
      B4FVH6, B6TEY5
      Conserved Domains (2) summary
      pfam00046
      Location:32 → 82
      Homeobox; Homeobox domain
      pfam02183
      Location:84 → 125
      HALZ; Homeobox associated leucine zipper

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050097.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      201454420..201456072 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001138891.1: Suppressed sequence

      Description
      NM_001138891.1: This RefSeq was removed because it is based upon an accession with many indels/SNPs relative to the genome
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials