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    Gm3636 predicted gene 3636 [ Mus musculus (house mouse) ]

    Gene ID: 100041151, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm3636provided by MGI
    Official Full Name
    predicted gene 3636provided by MGI
    Primary source
    MGI:MGI:3781812
    See related
    Ensembl:ENSMUSG00000091754 AllianceGenome:MGI:3781812
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    100042043
    Expression
    Biased expression in CNS E18 (RPKM 5.7), CNS E14 (RPKM 3.4) and 10 other tissues See more
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    Genomic context

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    See Gm3636 in Genome Data Viewer
    Location:
    14 A2; 14 4.02 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (15712153..15734090)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (6735683..6757601, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 31035 Neighboring gene predicted gene 3667 Neighboring gene predicted gene, 26680 Neighboring gene predicted gene 3642 Neighboring gene predicted gene 8050 Neighboring gene ubiquitin specific peptidase 7 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Takusan: a large gene family that regulates synaptic activity. Tu S, et al. Neuron, 2007 Jul 5. PMID 17610818, Free PMC Article
    2. Transcriptome analysis of mouse stem cells and early embryos. Sharov AA, et al. PLoS Biol, 2003 Dec. PMID 14691545, Free PMC Article
    3. Isolation of novel tissue-specific genes from cDNA libraries representing the individual tissue constituents of the gastrulating mouse embryo. Harrison SM, et al. Development, 1995 Aug. PMID 7671812
    4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    General protein information

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    Preferred Names
    uncharacterized protein LOC100041151
    Names
    alpha33-takusan
    alpha37-takusan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001309401.1 → NP_001296330.1  uncharacterized protein LOC100041151

      See identical proteins and their annotated locations for NP_001296330.1

      Status: VALIDATED

      Source sequence(s)
      AC161818, CD776167, CN668200, EF651834
      Consensus CDS
      CCDS84086.1
      UniProtKB/TrEMBL
      A6NAS3, A6NAV4, E9Q3J6
      Related
      ENSMUST00000163850.9
      Conserved Domains (1) summary
      pfam04822
      Location:1 → 70
      Takusan; Takusan

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      15712153..15734090
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017315721.3 → XP_017171210.1  uncharacterized protein LOC100041151 isoform X2

    2. XM_017315722.3 → XP_017171211.1  uncharacterized protein LOC100041151 isoform X3

    3. XM_006518136.4 → XP_006518199.1  uncharacterized protein LOC100041151 isoform X1

    4. XM_017315723.3 → XP_017171212.1  uncharacterized protein LOC100041151 isoform X4

    5. XM_036158305.1 → XP_036014198.1  uncharacterized protein LOC100041151 isoform X5

    6. XM_036158306.1 → XP_036014199.1  uncharacterized protein LOC100041151 isoform X6

    Nucleotide Protein Strain
    Heading Accession and Version

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