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    LOC105779902 transcription factor SRM1 [ Gossypium raimondii (Peruvian cotton) ]

    Gene ID: 105779902, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC105779902
    Gene description
    transcription factor SRM1
    Locus tag
    B456_012G135600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gossypium raimondii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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    Genomic context

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    See LOC105779902 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current ASM2569854v1 (GCF_025698545.1) 4 NC_068568.1 (4540395..4544431)
    100 previous assembly Graimondii2_0 (GCF_000327365.1) 12 NC_026940.1 (30883730..30887869, complement)

    Chromosome 4 - NC_068568.1Genomic Context describing neighboring genes Neighboring gene probable protein arginine N-methyltransferase 6 Neighboring gene mitochondrial import receptor subunit TOM40-1 Neighboring gene uncharacterized LOC105780338 Neighboring gene FAD synthetase 2, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor SRM1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2569854v1 Primary Assembly

    Genomic

    1. NC_068568.1 Reference ASM2569854v1 Primary Assembly

      Range
      4540395..4544431
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_052629295.1 → XP_052485255.1  transcription factor SRM1

      UniProtKB/TrEMBL
      A0A0D2VZ46

    2. XM_012603888.2 → XP_012459342.1  transcription factor SRM1

      See identical proteins and their annotated locations for XP_012459342.1

      UniProtKB/TrEMBL
      A0A0D2VZ46
      Conserved Domains (3) summary
      TIGR01557
      Location:115 → 167
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      smart00717
      Location:119 → 166
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd00167
      Location:11 → 57
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    3. XM_012603883.2 → XP_012459337.1  transcription factor SRM1

      See identical proteins and their annotated locations for XP_012459337.1

      UniProtKB/TrEMBL
      A0A0D2VZ46
      Conserved Domains (3) summary
      TIGR01557
      Location:115 → 167
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      smart00717
      Location:119 → 166
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd00167
      Location:11 → 57
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    4. XM_012603894.2 → XP_012459348.1  transcription factor SRM1

      See identical proteins and their annotated locations for XP_012459348.1

      UniProtKB/TrEMBL
      A0A0D2VZ46
      Conserved Domains (3) summary
      TIGR01557
      Location:115 → 167
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      smart00717
      Location:119 → 166
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd00167
      Location:11 → 57
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    5. XM_012603884.1 → XP_012459338.1  transcription factor SRM1

      See identical proteins and their annotated locations for XP_012459338.1

      UniProtKB/TrEMBL
      A0A0D2VZ46
      Conserved Domains (3) summary
      TIGR01557
      Location:115 → 167
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      smart00717
      Location:119 → 166
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd00167
      Location:11 → 57
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    Nucleotide Protein
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