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    LOC105635781 putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial [ Jatropha curcas ]

    Gene ID: 105635781, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC105635781
    Gene description
    putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial
    Locus tag
    JCGZ_08725
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Jatropha curcas
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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    Genomic context

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    See LOC105635781 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current RJC1_Hi-C (GCF_014843425.1) Unplaced Scaffold NW_023591417.1 (90518..93899, complement)
    101 previous assembly JatCur_1.0 (GCF_000696525.1) Unplaced Scaffold NW_012124308.1 (181624..185008, complement)

    NW_023591417.1Genomic Context describing neighboring genes Neighboring gene protein WVD2-like 4 Neighboring gene calcium-dependent protein kinase 26 Neighboring gene iron-sulfur cluster co-chaperone protein HscB homolog Neighboring gene uncharacterized LOC105635783

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Jatropha curcas Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference RJC1_Hi-C Primary Assembly

    Genomic

    1. NW_023591417.1 Reference RJC1_Hi-C Primary Assembly

      Range
      90518..93899 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020680017.2 → XP_020535676.1  putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial isoform X2

      Conserved Domains (2) summary
      sd00004
      Location:868 → 899
      PPR; PPR repeat [structural motif]
      cl25449
      Location:188 → 517
      PPR_2; PPR repeat family

    2. XM_012218880.3 → XP_012074270.1  putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial isoform X1

      See identical proteins and their annotated locations for XP_012074270.1

      UniProtKB/TrEMBL
      A0A067KIM5
      Conserved Domains (6) summary
      TIGR00756
      Location:973 → 1006
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:903 → 930
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:727 → 756
      PPR; PPR repeat
      pfam12854
      Location:930 → 960
      PPR_1; PPR repeat
      pfam13041
      Location:899 → 946
      PPR_2; PPR repeat family
      cl03252
      Location:838 → 856
      PPR; PPR repeat
    Nucleotide Protein
    Heading Accession and Version

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